Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq486 250 3e-61 >seq486 Length=217039 Score = 250 bits (276), Expect = 3e-61 Identities = 420/600 (70%), Gaps = 6/600 (1%) Strand=Plus/Plus Query 79305 CTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTC 79364 ||||||| | | ||| | || ||| |||| ||||| |||||||| ||| ||| ||||| Sbjct 175924 CTCCCCA-ACA-ATCAGCCAAGCCAGGGCTGTCGTGAGGGCACATAAGGCTCCACTCCTC 175981 Query 79365 GTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCG 79424 || ||||||||| ||| |||||| || || | ||||||||| || ||| || || || Sbjct 175982 GTTGTTCTCAACCCTCTTCATGAATAGATCTGAGATCCACAGAGCATAGAACAGCTCTCG 176041 Query 79425 GCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGC 79484 |||| ||||| | |||| |||| || || || || || | ||||| || Sbjct 176042 CGCGCGCACTTCCTCTTTGCCCGTGTTCTTCTTCAAGTCTAGGAACTCGAATATGTCAGC 176101 Query 79485 GTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGAC 79544 |||||||||||| || |||| |||||| | || |||||| ||||||||||| || Sbjct 176102 GTGCCACGGCTCGAGGTAGACGGCGAAGGCGCCGGGCCGCTTGTTGCCGCCCTGGTCCAC 176161 Query 79545 GTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTT 79604 ||| || |||||||||||| | || || ||||||||||| | |||| || ||||||||| Sbjct 176162 GTAGCGCGCCGTGTTGTTGTACACGCGCAGCATGGGCACCAGCCCGTTGGAGACGCCGTT 176221 Query 79605 CGTCCCGTTGATTCGTGTACCGCTCGCCCGAATG-TTCGAGCAGTGGATTCCGATGCCCC 79663 ||| || ||| || || |||| | ||| || || || | ||| ||||| | Sbjct 176222 CGTGCCCGCGATGTAGGTGCCTTTCGCTCTGATGCAATGAACA-TGAACTCCTATGCCGC 176280 Query 79664 CGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGT 79723 | | | ||||| || || |||| ||| || || |||||||| || ||||| || Sbjct 176281 CCGCGGATTTGGATATTAATGCACACTGCTTCAGAGTGTCGTAGATACCTTCGATGCTGT 176340 Query 79724 CGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGA 79783 |||||||||| |||| ||||| || || | ||| ||| | || |||| || Sbjct 176341 CGTCCTTCATGGCGATGAGGAAACATGAGGAGAGCTGAGGGCGGGGGGTGGCGGCCGAGA 176400 Query 79784 AGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGA 79843 | ||||| || | |||||||||||| |||| | | | ||| | ||| || || Sbjct 176401 ACAGGGTGGGGCTGGCGTGCGTGAAGTACTTCTCGGAGAGCAGGTTGTAGGTGGTGATGG 176460 Query 79844 CGCGCG-GGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGGC 79902 || ||| || |||| ||||||||||||||| | || ||||| | | || ||| ||| Sbjct 176461 CG-GCGTCGATGTCGGCGCCGTGGATGCCGATGGACACCCGCATCAGCATGTGCTGCGGC 176519 Score = 219 bits (242), Expect = 5e-52 Identities = 401/583 (69%), Gaps = 12/583 (2%) Strand=Plus/Minus Query 19102 GCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGT 19161 ||| ||| || | | ||||| || | |||||||||| |||| |||| || || Sbjct 176519 GCCGCAGCACATGCTGATGCGGGTGTCCATCGGCATCCACGGCGCCGACATC----GACG 176464 Query 19162 CCGCGAG----ACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCC 19217 |||| | || ||| ||||| | | |||||| |||||||||||| | || |||| Sbjct 176463 CCGCCATCACCACCTACAACCTGCTCTCCGAGAAGTACTTCACGCACGCCAGCCCCACCC 176404 Query 19218 TTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGG 19277 | ||| |||| || | ||| ||| | || |||||||| | || ||||||| Sbjct 176403 TGTTCTCGGCCGCCACCCCCCGCCCTCAGCTCTCCTCATGTTTCCTCATCGCCATGAAGG 176344 Query 19278 ATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGT 19337 | |||||||| || || |||||||| || || ||| |||| || || ||||| | Sbjct 176343 ACGACAGCATCGAAGGTATCTACGACACTCTGAAGCAGTGTGCATTAATATCCAAATCCG 176284 Query 19338 CCGGGGGTATCGGGATCCACTGCTCGAAT--ATCCGGTCGAGTGGTACACGAATCAATGG 19395 | || || || || | || || || | | ||| | ||| || || ||| || Sbjct 176283 CGGGCGGCATAGGAGTTCA-TGTTC-ATTGCATCAGAGCGAAAGGCACCTACATCGCGGG 176226 Query 19396 GACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAG 19455 |||||||| || || |||| | || || ||||| ||||| | |||||||||||| | Sbjct 176225 CACGAACGGCGTCTCCAACGGGCTGGTGCCCATGCTGCGCGTGTACAACAACACGGCGCG 176166 Query 19456 GTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATG 19515 ||||| ||||||| ||| ||| || ||| | |||||| ||||||||||||| || Sbjct 176165 CTACGTGGACCAGGGCGGCAACAAGCGGCCCGGCGCCTTCGCCGTCTACCTCGAGCCGTG 176106 Query 19516 GCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCG 19575 |||||| ||| | | || ||||| || || |||| ||| | ||||| |||| Sbjct 176105 GCACGCTGACATATTCGAGTTCCTAGACTTGAAGAAGAACACGGGCAAAGAGGAAGTGCG 176046 Query 19576 CTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAA 19635 | || || || ||| || ||||||| | || ||||||||| ||| ||||||||| Sbjct 176045 CGCGCGAGAGCTGTTCTATGCTCTGTGGATCTCAGATCTATTCATGAAGAGGGTTGAGAA 175986 Query 19636 GGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGC 19678 |||| || ||| ||| |||||||| ||||| |||||||| Sbjct 175985 CAACGAGGAGTGGAGCCTTATGTGCCCTCACGACAGCCCTGGC 175943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548512499331360