Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq486 250 3e-61
>seq486
Length=217039
Score = 250 bits (276), Expect = 3e-61
Identities = 420/600 (70%), Gaps = 6/600 (1%)
Strand=Plus/Plus
Query 79305 CTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTC 79364
||||||| | | ||| | || ||| |||| ||||| |||||||| ||| ||| |||||
Sbjct 175924 CTCCCCA-ACA-ATCAGCCAAGCCAGGGCTGTCGTGAGGGCACATAAGGCTCCACTCCTC 175981
Query 79365 GTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCG 79424
|| ||||||||| ||| |||||| || || | ||||||||| || ||| || || ||
Sbjct 175982 GTTGTTCTCAACCCTCTTCATGAATAGATCTGAGATCCACAGAGCATAGAACAGCTCTCG 176041
Query 79425 GCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGC 79484
|||| ||||| | |||| |||| || || || || || | ||||| ||
Sbjct 176042 CGCGCGCACTTCCTCTTTGCCCGTGTTCTTCTTCAAGTCTAGGAACTCGAATATGTCAGC 176101
Query 79485 GTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGAC 79544
|||||||||||| || |||| |||||| | || |||||| ||||||||||| ||
Sbjct 176102 GTGCCACGGCTCGAGGTAGACGGCGAAGGCGCCGGGCCGCTTGTTGCCGCCCTGGTCCAC 176161
Query 79545 GTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTT 79604
||| || |||||||||||| | || || ||||||||||| | |||| || |||||||||
Sbjct 176162 GTAGCGCGCCGTGTTGTTGTACACGCGCAGCATGGGCACCAGCCCGTTGGAGACGCCGTT 176221
Query 79605 CGTCCCGTTGATTCGTGTACCGCTCGCCCGAATG-TTCGAGCAGTGGATTCCGATGCCCC 79663
||| || ||| || || |||| | ||| || || || | ||| ||||| |
Sbjct 176222 CGTGCCCGCGATGTAGGTGCCTTTCGCTCTGATGCAATGAACA-TGAACTCCTATGCCGC 176280
Query 79664 CGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGT 79723
| | | ||||| || || |||| ||| || || |||||||| || ||||| ||
Sbjct 176281 CCGCGGATTTGGATATTAATGCACACTGCTTCAGAGTGTCGTAGATACCTTCGATGCTGT 176340
Query 79724 CGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGA 79783
|||||||||| |||| ||||| || || | ||| ||| | || |||| ||
Sbjct 176341 CGTCCTTCATGGCGATGAGGAAACATGAGGAGAGCTGAGGGCGGGGGGTGGCGGCCGAGA 176400
Query 79784 AGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGA 79843
| ||||| || | |||||||||||| |||| | | | ||| | ||| || ||
Sbjct 176401 ACAGGGTGGGGCTGGCGTGCGTGAAGTACTTCTCGGAGAGCAGGTTGTAGGTGGTGATGG 176460
Query 79844 CGCGCG-GGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGGC 79902
|| ||| || |||| ||||||||||||||| | || ||||| | | || ||| |||
Sbjct 176461 CG-GCGTCGATGTCGGCGCCGTGGATGCCGATGGACACCCGCATCAGCATGTGCTGCGGC 176519
Score = 219 bits (242), Expect = 5e-52
Identities = 401/583 (69%), Gaps = 12/583 (2%)
Strand=Plus/Minus
Query 19102 GCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGT 19161
||| ||| || | | ||||| || | |||||||||| |||| |||| || ||
Sbjct 176519 GCCGCAGCACATGCTGATGCGGGTGTCCATCGGCATCCACGGCGCCGACATC----GACG 176464
Query 19162 CCGCGAG----ACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCC 19217
|||| | || ||| ||||| | | |||||| |||||||||||| | || ||||
Sbjct 176463 CCGCCATCACCACCTACAACCTGCTCTCCGAGAAGTACTTCACGCACGCCAGCCCCACCC 176404
Query 19218 TTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGG 19277
| ||| |||| || | ||| ||| | || |||||||| | || |||||||
Sbjct 176403 TGTTCTCGGCCGCCACCCCCCGCCCTCAGCTCTCCTCATGTTTCCTCATCGCCATGAAGG 176344
Query 19278 ATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGT 19337
| |||||||| || || |||||||| || || ||| |||| || || ||||| |
Sbjct 176343 ACGACAGCATCGAAGGTATCTACGACACTCTGAAGCAGTGTGCATTAATATCCAAATCCG 176284
Query 19338 CCGGGGGTATCGGGATCCACTGCTCGAAT--ATCCGGTCGAGTGGTACACGAATCAATGG 19395
| || || || || | || || || | | ||| | ||| || || ||| ||
Sbjct 176283 CGGGCGGCATAGGAGTTCA-TGTTC-ATTGCATCAGAGCGAAAGGCACCTACATCGCGGG 176226
Query 19396 GACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAG 19455
|||||||| || || |||| | || || ||||| ||||| | |||||||||||| |
Sbjct 176225 CACGAACGGCGTCTCCAACGGGCTGGTGCCCATGCTGCGCGTGTACAACAACACGGCGCG 176166
Query 19456 GTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATG 19515
||||| ||||||| ||| ||| || ||| | |||||| ||||||||||||| ||
Sbjct 176165 CTACGTGGACCAGGGCGGCAACAAGCGGCCCGGCGCCTTCGCCGTCTACCTCGAGCCGTG 176106
Query 19516 GCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCG 19575
|||||| ||| | | || ||||| || || |||| ||| | ||||| ||||
Sbjct 176105 GCACGCTGACATATTCGAGTTCCTAGACTTGAAGAAGAACACGGGCAAAGAGGAAGTGCG 176046
Query 19576 CTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAA 19635
| || || || ||| || ||||||| | || ||||||||| ||| |||||||||
Sbjct 176045 CGCGCGAGAGCTGTTCTATGCTCTGTGGATCTCAGATCTATTCATGAAGAGGGTTGAGAA 175986
Query 19636 GGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGC 19678
|||| || ||| ||| |||||||| ||||| ||||||||
Sbjct 175985 CAACGAGGAGTGGAGCCTTATGTGCCCTCACGACAGCCCTGGC 175943
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548512499331360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |