Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq486 223 4e-53 >seq486 Length=217039 Score = 223 bits (246), Expect = 4e-53 Identities = 345/490 (70%), Gaps = 2/490 (0%) Strand=Plus/Minus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||||||| |||||||||| || ||||||||| || | || | ||||||| | Sbjct 176431 AAGTACTTCACGCACGCCAGCCCCACCCTGTTCTCGGCCGCCACCCCCCGCCCTCAGCTC 176372 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || || ||||| | || |||||||| ||| ||||| || |||||||| || || Sbjct 176371 TCCTCATGTTTCCTCATCGCCATGAAGGACGACAGCATCGAAGGTATCTACGACACTCTG 176312 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAA-CGT 53445 ||| ||||||| || ||||| | |||| || || || | || || || | | Sbjct 176311 AAGCAGTGTGCATTAATATCCAAATCCGCGGGCGGCATAGGAGTTCA-TGTTCATTGCAT 176253 Query 53446 CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTAT 53505 | | ||||| ||||| ||| ||| |||||||||||| || | || | ||||| || Sbjct 176252 CAGAGCGAAAGGCACCTACATCGCGGGCACGAACGGCGTCTCCAACGGGCTGGTGCCCAT 176193 Query 53506 GCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGG 53565 ||| ||||| | |||||||||||| || ||||| ||||||| || ||||| || Sbjct 176192 GCTGCGCGTGTACAACAACACGGCGCGCTACGTGGACCAGGGCGGCAACAAGCGGCCCGG 176133 Query 53566 GTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCG 53625 | |||||| |||||||||||||||||||||| ||||| | ||||| || || || Sbjct 176132 CGCCTTCGCCGTCTACCTCGAGCCGTGGCACGCTGACATATTCGAGTTCCTAGACTTGAA 176073 Query 53626 TCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCC 53685 ||| ||| | || || ||||| || || ||||| ||||||||||| | Sbjct 176072 GAAGAACACGGGCAAAGAGGAAGTGCGCGCGCGAGAGCTGTTCTATGCTCTGTGGATCTC 176013 Query 53686 GGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGA 53745 || || |||||| | | ||| ||||| ||||||||||| ||| |||||||| |||| Sbjct 176012 AGATCTATTCATGAAGAGGGTTGAGAACAACGAGGAGTGGAGCCTTATGTGCCCTCACGA 175953 Query 53746 GTGCCCCGGC 53755 |||| ||| Sbjct 175952 CAGCCCTGGC 175943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547203728681200