Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_028448.1
Length=167467
Score E
Sequences producing significant alignments: (Bits) Value
seq236 199 4e-46
seq637 152 6e-32
seq895 84.2 2e-11
>seq236
Length=545527
Score = 199 bits (220), Expect = 4e-46
Identities = 154/183 (84%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 3806 TTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 3865
||||| || |||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 30895 TTACAGGCTTTCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTCAGAGA 30836
Query 3866 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 3925
||| ||||| || |||||||| || || || |||||||||||||| |||||||| || ||
Sbjct 30835 GTTGAAGCGTACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCTGGGTG 30776
Query 3926 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACC 3985
|| ||| || || ||| ||||| || ||||| ||||| ||||| ||||| ||||||||
Sbjct 30775 CTCAACCGCGTCCATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGACCACC 30716
Query 3986 TTC 3988
|||
Sbjct 30715 TTC 30713
>seq637
Length=122170
Score = 152 bits (168), Expect = 6e-32
Identities = 138/174 (79%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 3815 CTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCG 3874
|| ||| || ||||| | ||||||||| |||||||||| |||||| |||||||| ||
Sbjct 107115 CTGAGTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGAGTTAAAACG 107174
Query 3875 AACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGC 3934
||||| || || |||||||||||||||||||| |||||||| || ||||| | | ||
Sbjct 107175 TACTGCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATGTTCCATCGC 107234
Query 3935 ATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 3988
||| ||| ||||||| || ||||| ||||||||||| |||||||||||
Sbjct 107235 ATCGAGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTGCTGACCACCTTC 107288
>seq895
Length=39754
Score = 84.2 bits (92), Expect = 2e-11
Identities = 121/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 3819 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 3878
||||| || || | || || || ||||||| || | ||||| | ||||| || ||
Sbjct 11880 GTAAACGTTCGCGAAATCACATCCTGCTGCTGCTCGCGCGTCAGGGCATTAAACCGCACC 11939
Query 3879 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 3938
||||| || || || ||||||||||| | ||| || || || |||||| || |||||
Sbjct 11940 GCATAGCCCGAGACGCGGATGGTCAGGTTCGGGTAGTTCTCGGGATGCGCAATGGCATCG 11999
Query 3939 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCA 3989
|| | || || || ||||||||||||||||| || || || |||
Sbjct 12000 AGGAGCATCTCCCGGTTCATCACGTTAACGTTCAGGTGCTGCCCGCCCTCA 12050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 535754385438480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |