Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq997 306 2e-78 >seq997 Length=29618 Score = 306 bits (338), Expect = 2e-78 Identities = 374/508 (74%), Gaps = 13/508 (3%) Strand=Plus/Minus Query 32057 CTGCCGTTCTGGCGCTG--ATTGCCGCAGGTGCTTCTGCGCCTGAAATCCTCGACCAGTT 32114 |||| ||||||| |||| |||| || |||||| |||| | | ||| ||||| ||||| Sbjct 20900 CTGCAGTTCTGGGGCTGGTATTG--GCTGGTGCTCCTGCATCCGTAATTCTCGATCAGTT 20843 Query 32115 TCTGGATGAAAAGGAAGGTAACCACACCACGGCATACCGTGATGGTGCGGGTATCTGGAC 32174 |||| ||||||| || |||||| | |||||| ||| ||||||| ||||| ||||| Sbjct 20842 TCTGAATGAAAAAGAGGGTAACAGCCTCACGGCCTACAAAGATGGTGGTGGTATTTGGAC 20783 Query 32175 CATCTGCCGTGGAGCCACCCGGGTGGATGGTAAGCCTGTGATTCCTGGCATGAAGCTGTC 32234 || ||||| || || || ||| ||| |||| || || | | |||||||| || | Sbjct 20782 TATTTGCCGCGGCGCAACGATGGTTGATCGTAAACCGGTTGTGCAGGGCATGAAATTGAC 20723 Query 32235 GAAGGAAAAATGCGACCGGGTTAACGCTATCGAACGGGATAAGGCGCTGGCATGGGTGGA 32294 ||| |||||| | | ||| || ||||||||||| ||||||| ||||||||||| || Sbjct 20722 ACAGGCCAAATGCAATCTGGTGAATGCTATCGAACGCAATAAGGCTCTGGCATGGGTTGA 20663 Query 32295 GCGTAATATAAAAGTTCCACTGACCGAGCCACAAAAAGCAGGTATCGCGTCATTTTGCCC 32354 || ||||| || || || ||||| || || ||||| || ||||| || || || || Sbjct 20662 CCGCAATATTTCGGTACCGCTTACCGAACCGCAGAAAGCTGGAATCGCATCTTTCTGTCC 20603 Query 32355 CTATAACATTGGCCCCGGTAAGTGTTTCCCGTCGACGTTTTATAAGCGGCTTAATGCAGG 32414 || ||||| || || |||||||| |||||||| ||||| |||||||| | ||||| || Sbjct 20602 GTACAACATCGGGCCGGGTAAGTGCTTCCCGTCAACGTTCTATAAGCGCATCAATGCCGG 20543 Query 32415 CGATCGCAGGGGAGCGTGTGAGGCGATTCGCTGGTGGATTAAGGACGGTGGCAGAGACTG 32474 || ||| || || || ||||| |||||||||||||||| |||| |||| | ||||| Sbjct 20542 TGACCGCCCCGGGGCATGCGAGGCAATTCGCTGGTGGATTAGAGACGCTGGCCGCGACTG 20483 Query 32475 CCG------TA---TCCGTTCAAACAACTGTTACGGTCAGGTATCAAGACGTGACCAGGA 32525 ||| || || ||| ||| |||||||||||| | | || |||||||| Sbjct 20482 CCGCCTGACTAAAGGCCAGAAGAACGGCTGCTACGGTCAGGTAGAACGGCGAGACCAGGA 20423 Query 32526 GAGTGCGCTGGCATGCTGGGGTATCGAC 32553 ||||| |||| |||||||| || ||| Sbjct 20422 AAGTGCTTTGGCGTGCTGGGGGATAGAC 20395 Score = 158 bits (174), Expect = 5e-34 Identities = 239/336 (71%), Gaps = 18/336 (5%) Strand=Plus/Minus Query 33623 AATCATTACCGCGATAACGCCATAACCTACAAAGAGCAGCGCGATAAAAAAGTCAGTGAG 33682 || || || ||||| |||||||| |||||||||||||||||||||||| | || |||| Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAA---GCCACTGAG 18129 Query 33683 ---CTGGAGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATGTTGCT 33739 || | ||| || || ||||| | || |||||| ||||||||||||| ||| Sbjct 18128 AAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCT 18069 Query 33740 GCACTTGATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTT 33799 || || ||||||| |||| | | ||| || ||||||| || | | ||| ||| Sbjct 18068 GCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTG 18009 Query 33800 C---GCGCTGACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAGGT 33856 | ||| || | |||| | || | || |||| | ||||||| | |||||| | Sbjct 18008 CATAGCGATGTCATTGCTGGCCGTAAGCGG---CTGCAGCTCAACGCAAACTGTCCCG-- 17954 Query 33857 CCCGTGCGTGAAGCCACCGGCACCGCCCGCGTGGATAATGCAACCGGCCCCCGACTGGCA 33916 || || ||| |||||||||| | || ||| |||| |||||||| |||| | Sbjct 17953 --CGAACGG--AGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACT 17898 Query 33917 GACACCGCTGAACGGGATTATTTCACCCTCAGAGAG 33952 ||| ||||||||||||||||||||| ||||||| || Sbjct 17897 GACTCCGCTGAACGGGATTATTTCATCCTCAGAAAG 17862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203291555060020