Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq197 122 5e-23 seq1030 96.9 2e-15 >seq197 Length=620651 Score = 122 bits (134), Expect = 5e-23 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| ||||| || ||||| ||| || || || ||||| ||||| | ||| || Sbjct 446715 AGACGCAATACCAAGTGAAGAGTCGACTCTTTCTGGATATTATAGTCTGACAATGTACGG 446774 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| |||||||||||||| || || | ||||| ||||| || || | || ||| Sbjct 446775 CCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAGGGATGCCTTCC 446834 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCT-TCGCTCTCCACTTCCACGG 34666 |||||| |||| || | || || | || |||||| ||| || ||||||| | Sbjct 446835 TTGTCTTGGATC-TTGGCCTTCACATTCTCGATGGTGTCTGAAGCT-TCAACTTCCAGAG 446892 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || |||| |||||||| ||||||||||| Sbjct 446893 TGATTGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 446932 Score = 116 bits (128), Expect = 2e-21 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| ||||| || || || ||| || || || ||||| || || | ||| || Sbjct 448872 AGACGCAATACCAAGTGAAGGGTTGACTCTTTCTGGATATTATAGTCAGACAATGTACGG 448931 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| |||||||||||||| || || | ||||| ||||| || || | || ||| Sbjct 448932 CCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAGGGATGCCTTCC 448991 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCT-TCGCTCTCCACTTCCACGG 34666 |||||| |||| || | || || | || |||||| ||| |||||||||| | Sbjct 448992 TTGTCTTGGATC-TTGGCCTTCACATTCTCGATGGTGTCTGAAGCT-TCCACTTCCAGAG 449049 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || |||| |||||||| ||||||||||| Sbjct 449050 TGATTGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCAT 449089 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||||| |||||| || || ||| ||| || || ||||| || || || Sbjct 449338 CCACCTCGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 449397 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || | ||||| || ||||| || || | ||| ||||| || || Sbjct 449398 AGGGTGCGGCCATCCTCCAACTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 449457 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | |||||| |||||| |||||| | || || | |||||||||| | ||||| Sbjct 449458 ATTCCCTCTTTGTCTTGGATCTTG-GCCTTCACATTCTCAATTGTGTCTGAGGCTTCCAC 449516 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || || || | |||||||| ||||||||||| Sbjct 449517 TTCCAGGGTAATTGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 449564 Score = 116 bits (128), Expect = 2e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||||| |||||| || || ||| ||| || || ||||| || || || Sbjct 449566 CCACCTCGCAGACGCAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 449625 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || |||||||||| || || || || || || | |||||| ||||| ||||| Sbjct 449626 AAGGTGCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGCGGG 449685 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | ||||| ||||| |||||| | |||||| | || |||||| | ||| || Sbjct 449686 ATGCCCTCTTTGTCCTGGATCTTC-GCCTTAACGTTCTCGATGGTGTCTGCAGGCTCGAC 449744 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 |||| || || ||||| || || | || ||||| || ||||||||||||| Sbjct 449745 CTCCAAAGTGATGGTTTTCCCAGTCAGGGTCTTCACGAATATCTGCATGTTGA 449797 Score = 107 bits (118), Expect = 1e-18 Identities = 159/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| || | |||||| || |||||| |||||||| || || || | || || Sbjct 447659 AGACGCAAAACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGA 447718 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || |||||||| || || || | |||||||||||| || || | |||||| Sbjct 447719 CCATCCTCCAGCTGTTTACCAGCGAAGATGAGACGCTGTTGGTCGGGAGGGATGCCCTCC 447778 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCT-TCGCTCTCCACTTCCACGG 34666 |||||| |||| || | || || | || |||||| ||| || ||||||| || Sbjct 447779 TTGTCTTGGATC-TTGGCCTTCACATTCTCGATGGTGTCTGAAGCT-TCAACTTCCAGGG 447836 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || || | ||||| || ||||||||||| Sbjct 447837 TGATGGTCTTTCCTGTCAGAGTTTTGACGAAAATCTGCAT 447876 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || |||||| |||||| |||||||| || || || || || || Sbjct 447887 AGACGCAGTACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGATAGGGTGCGG 447946 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||| ||||| || || || | |||||| ||||| || || | |||||| Sbjct 447947 CCATCTTCTAGTTGCTTACCAGCGAAGATCAGACGCTGCTGGTCTGGGGGGATACCCTCC 448006 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTC-GCTCTCCACTTCCACGGT 34667 ||||| |||||| |||| || ||||| ||| || ||||||| || Sbjct 448007 TTGTCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCCGAAGCT-TCAACTTCCAGAGT 448065 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || ||||| ||||||||||| Sbjct 448066 GATGGTCTTTCCCGTCAGAGTCTTCACGAAAATCTGCAT 448104 Score = 102 bits (112), Expect = 5e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||||| || | |||||| || || || || ||||| || || || Sbjct 447162 CCTCCTCGCAGACGCAAAACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAC 447221 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || |||||||||| || || || ||||| || || | ||| ||||| || || Sbjct 447222 AAGGTGCGGCCGTCTTCAAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 447281 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTC-GCTCTCCA 34657 | |||||| |||||| |||||| | ||| || | || |||||| ||| || | Sbjct 447282 ATTCCCTCTTTGTCTTGGATCTTG-GCTTTGACATTCTCGATGGTGTCTGAAGCT-TCAA 447339 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || || || || || | |||||||| ||||||||||| Sbjct 447340 CTTCCAGAGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 447388 Score = 98.7 bits (108), Expect = 6e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| ||||| || || || ||| || || || ||||| || || | ||| || Sbjct 447399 AGACGCAATACCAAGTGAAGGGTTGACTCTTTCTGGATATTATAGTCAGACAATGTACGG 447458 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| |||||||||||||| || || | ||||| ||||| || || | |||||| Sbjct 447459 CCGTCTTCTAGTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAGGGATGCCCTCC 447518 Query 34609 TTGTCTGTGATCTT 34622 |||||| |||||| Sbjct 447519 TTGTCTTGGATCTT 447532 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| || || || || | ||| || || |||||| || ||||| || || || Sbjct 448106 CCTCCTCGGAGTCGTAAAACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAT 448165 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || ||||||| || || ||||| || || || | |||||| |||||||| || Sbjct 448166 AAGGTGCGGCCGTCTTCTAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGAGGA 448225 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTC-GCTCTCCAC 34658 | || ||||||||| |||||| |||| || |||||| ||| || || Sbjct 448226 ATGCCTTCCTTGTCTTGGATCTTAGCCTTTACATTCTCGATGGTGTCTGAAGCT-TCGAC 448284 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || || || | |||||||| ||||||||||| Sbjct 448285 TTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 448332 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/238 (68%), Gaps = 21/238 (9%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| ||||| || || || ||| || || || ||||| || || | ||| || Sbjct 449100 AGACGCAATACCAAGTGAAGGGTTGACTCTTTCTGGATATTATAGTCAGACAATGTACGG 449159 Query 34549 TCGTCTTCAAGTTGTTTACCGGC-------------------AAATATTAAACGCTGTTG 34589 ||||||| |||||||||||||| ||| || || | ||| || Sbjct 449160 CCGTCTTCTAGTTGTTTACCGGCGATCTAACTGTTTGCCTGCAAAGATCAACCTCTGCTG 449219 Query 34590 GTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTT 34648 ||| || || | |||||| |||||| |||||| | || || | |||||||||| Sbjct 449220 GTCTGGGGGAATTCCCTCTTTGTCTTGGATCTTG-GCCTTCACATTCTCAATTGTGTCTG 449278 Query 34649 CGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||||||||| ||| || || || || || | |||||||| ||||||||||| Sbjct 449279 AGGCTTCCACTTCCAGGGTAATTGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 449336 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| || ||||| || || ||| ||||||||| ||||| || || || | || || Sbjct 446259 AGACGTAATACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGA 446318 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || ||||||||||| || || | |||||| ||||| || || | |||||| Sbjct 446319 CCATCCTCCAGCTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCC 446378 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTC-GCTCTCCACTTCCACGGT 34667 ||||| |||||| |||| || ||||| ||| || ||||||| || Sbjct 446379 TTGTCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCCGAAGCT-TCAACTTCCAGAGT 446437 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || ||||| ||||||||||| Sbjct 446438 GATGGTCTTTCCCGTCAGAGTCTTCACGAAAATCTGCAT 446476 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| || || || || | ||| || || |||||| || ||||| || || || Sbjct 446478 CCTCCTCGGAGTCGTAAAACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAT 446537 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || ||||||| || || ||||| || || || | |||||| |||||||| || Sbjct 446538 AAGGTGCGGCCGTCTTCTAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGAGGA 446597 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTC-GCTCTCCAC 34658 | || ||||||||| |||||| |||| || |||||| ||| || || Sbjct 446598 ATGCCTTCCTTGTCTTGGATCTTAGCCTTTACATTCTCGATGGTGTCTGAAGCT-TCGAC 446656 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || || || || || | |||||||| ||||||||||| Sbjct 446657 TTCTAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 446704 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | ||||| || |||||| ||| || |||||||| || || || Sbjct 446934 CCACCTCGCAGACGAAGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGAC 446993 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | || ||||| || || || | |||||| ||||| || || Sbjct 446994 AGGGTGCGGCCATCTTCCAACTGCTTACCAGCGAAGATCAGACGCTGCTGGTCTGGAGGG 447053 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | |||||| | || || || | ||| || Sbjct 447054 ATGCCCTCCTTGTCCTGGATC-TTAGCTTTAACATTCTCGATAGTATCGGCTGGCTCGAC 447112 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || |||||||| || | || || || ||||||||||| Sbjct 447113 CTCAAGAGTGATAGTTTTACCAGTAAGAGTCTTGACGAAAATCTGCAT 447160 >seq1030 Length=27445 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | ||||||||| || || || ||||| || ||||| || || || Sbjct 2674 CCTCCTCTAAGCCTCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAC 2733 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || |||||||| || || || | ||||| |||||||| || Sbjct 2734 AGGGTACGGCCATCCTCCAGCTGTTTACCAGCGAAGATCAGTCGCTGCTGGTCCGGGGGG 2793 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||||||||| |||||| ||| | | || ||||| |||||| Sbjct 2794 ATACCCTCCTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTGTCGGAAGCCTCCACC 2853 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | ||| || || || || || | || ||||| || |||||||| ||| Sbjct 2854 TCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTCACGAAGATCTGCATATTG 2904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314722718634002