Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq197 154 1e-32 seq270 95.1 1e-14 >seq197 Length=620651 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||||||||| || ||| | || || || ||||| ||| | || Sbjct 447876 ATGCAGATTTTCGTCAAAACTCTGACAGGAAAGACCATCACCCTGGAAGTTGAAGCTTCA 447817 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || |||||||| || ||||| || ||||| ||| Sbjct 447816 GACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAA 447757 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || ||||| |||| || || ||| | ||||| |||||| Sbjct 447756 CAGCGTCTCATCTTCGCTGGTAAACAGCTGGAGGATGGTCGCACCTTGTCCGACTACAAC 447697 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||| | ||| | ||||||||| |||| || || || Sbjct 447696 ATTCAGAAGGAGTCTACCCTCCATCTTGTTTTGCGTCTGCGCGGAGGTAT 447647 Score = 152 bits (168), Expect = 4e-32 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || |||||||| || ||| | || ||||| ||||| ||| | || Sbjct 448589 ATGCAGATCTTTGTCAAGACTCTGACGGGAAAGACCATCACTCTGGAAGTTGAAGCTTCA 448530 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| |||||| || || ||||||||||| || || || || || || Sbjct 448529 GACATCATTGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGACCAG 448470 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||||||| || | || || || ||| | ||||| |||||| Sbjct 448469 CAGAGGTTGATCTTCGCCGGCAACCAGCTAGAGGATGGTCGCACCTTGTCCGACTACAAC 448410 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGG 27211 ||||| |||||||| ||| | ||| | ||||||||| |||| || Sbjct 448409 ATTCAGAAGGAGTCTACCCTCCATCTTGTTTTGCGTCTGCGTGG 448366 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| ||||| |||||| | ||||| || ||||||||| | || Sbjct 449564 ATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACAATTACCCTGGAAGTGGAAGCCTCA 449505 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || ||||||||||| || || || || || || Sbjct 449504 GACACAATTGAGAATGTGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGACCAG 449445 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || |||||||| ||||| || | ||| | || || |||||| Sbjct 449444 CAGAGGTTGATCTTTGCAGGCAAACAGTTGGAGGATGGCCGCACCCTGTCTGACTACAAC 449385 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| ||| | || ||||| ||||| |||| ||||| || Sbjct 449384 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTGCGTCTGCGAGGTGGTAT 449335 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || |||||||| || ||| | || ||||| ||||| ||| | || Sbjct 446476 ATGCAGATTTTCGTGAAGACTCTGACGGGAAAGACCATCACTCTGGAAGTTGAAGCTTCG 446417 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || ||||| || || || || || || || Sbjct 446416 GACACCATCGAGAATGTAAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 446357 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| ||||| |||| || || ||| | ||||| |||||| Sbjct 446356 CAGCGTCTCATCTTCGCCGGTAAACAGCTGGAGGATGGTCGCACCTTGTCCGACTACAAC 446297 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 || ||||||||||| ||| | || ||||| || ||| | || ||||||| Sbjct 446296 ATCCAAAAGGAGTCCACCCTTCACTTGGTATTACGTCTCCGTGGTGGCA 446248 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| ||||| |||||| | || ||||| ||||| ||| | || Sbjct 447388 ATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACTCTGGAAGTTGAAGCTTCA 447329 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| || || ||||||||||| || || || || || || Sbjct 447328 GACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGACCAG 447269 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || ||||| || | |||||| | ||| | ||||| |||||| Sbjct 447268 CAGAGGTTGATCTTTGCAGGCAAGCAGCTTGAAGACGGCCGCACCTTGTCCGACTACAAC 447209 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || ||| | ||| | ||||||||| |||| || || || Sbjct 447208 ATCCAGAAAGAATCTACCCTCCATCTTGTTTTGCGTCTGCGAGGAGGTAT 447159 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||||||||| || || || ||||| || || | || ||| | || || || || | Sbjct 449793 CATGCAGATATTCGTGAAGACCCTGACTGGGAAAACCATCACTTTGGAGGTCGAGCCTGC 449734 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || || || || |||||||| ||||| || ||||| || Sbjct 449733 AGACACCATCGAGAACGTTAAGGCGAAGATCCAGGACAAAGAGGGCATCCCGCCCGACCA 449674 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| ||||| || | |||||| | ||| | ||||| ||||| Sbjct 449673 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAAGACGGCCGCACCTTGTCCGACTACAA 449614 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| ||| | || ||||| ||||| |||| ||||| || Sbjct 449613 CATCCAGAAAGAGTCCACCCTGCACTTGGTGCTGCGTCTGCGAGGTGGTAT 449563 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || |||||||| || ||| | || ||||| ||||| ||| | || Sbjct 448104 ATGCAGATTTTCGTGAAGACTCTGACGGGAAAGACCATCACTCTGGAAGTTGAAGCTTCG 448045 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || ||||| || || || || || || || Sbjct 448044 GACACCATCGAGAATGTAAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAG 447985 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || ||| | ||||| | ||| | ||||| |||||| Sbjct 447984 CAGCGTCTGATCTTCGCTGGTAAGCAACTAGAAGATGGCCGCACCCTATCCGACTACAAC 447925 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || | || ||||| ||||| |||| || || || Sbjct 447924 ATTCAGAAGGAGTCCACTCTTCACTTGGTACTGCGTCTGCGCGGAGGTAT 447875 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || || || |||| |||||||| || || || || Sbjct 447160 ATGCAGATTTTCGTCAAGACTCTTACTGGTAAAACTATCACTCTTGAGGTCGAGCCAGCC 447101 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || ||| || || || ||||| || ||||| || || || || Sbjct 447100 GATACTATCGAGAATGTTAAAGCTAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAG 447041 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || || |||||||| | ||| | || || |||||| Sbjct 447040 CAGCGTCTGATCTTCGCTGGTAAGCAGTTGGAAGATGGCCGCACCCTGTCTGACTACAAC 446981 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| || | || ||||| | ||| |||| ||||| || Sbjct 446980 ATTCAGAAAGAGTCCACTCTTCACTTGGTACTTCGTCTGCGAGGTGGTAT 446931 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||||||||| || ||| | || ||||| ||||| ||| | || Sbjct 448861 ATGCAGATTTTCGTGAAAACTCTGACGGGAAAGACCATCACTCTGGAAGTTGAAGCTTCA 448802 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| |||||| || || |||||||| || ||||| || ||||| ||| Sbjct 448801 GACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAA 448742 Query 27108 CAGCGTTTAATATACGC 27124 |||||| | || | ||| Sbjct 448741 CAGCGTCTCATCTTCGC 448725 Score = 102 bits (112), Expect = 7e-17 Identities = 169/249 (68%), Gaps = 19/249 (8%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| ||||| |||||| | ||||| || ||||||||| | || Sbjct 449336 ATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACAATTACCCTGGAAGTGGAAGCCTCA 449277 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || ||||||||||| || || || || || || Sbjct 449276 GACACAATTGAGAATGTGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGACCAG 449217 Query 27108 CAGCGTTTAATAT-------------------ACGCCGGCAAACAATTGGAAGACAGTTC 27148 ||| | || || | |||||| |||||| | |||||| | Sbjct 449216 CAGAGGTTGATCTTTGCAGGCAAACAGTTAGATCGCCGGTAAACAACTAGAAGACGGCCG 449157 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 || | || || || || || || || ||||| ||| | || ||||| |||||| |||| Sbjct 449156 TACATTGTCTGACTATAATATCCAGAAAGAGTCAACCCTTCACTTGGTATTGCGTCTGCG 449097 Query 27209 GGGTGGCAT 27217 ||||| || Sbjct 449096 TGGTGGTAT 449088 >seq270 Length=486759 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 49240 ATGACGCCTGTCACGCCTATGTTGGCGGACGTGTGCAAATCCATGTCAACGGCGATGAAA 49299 ||||| || || ||| ||||| || || | ||||| ||| | || ||| ||||| Sbjct 121694 ATGACACCAGTTCTGCCGATGTTAGCCGAAGCATGCAAGTCCGTTGAAATGGCAATGAAG 121635 Query 49300 AAGTGTCCCGACGGAATGTTGGCGGAAATTAAATATGACGGCGAACGTGTGCAAATTCAC 49359 || ||||| | |||||||| | |||||||||||||| || ||| | || ||| | ||| Sbjct 121634 AAATGTCCTAATGGAATGTTCTCTGAAATTAAATATGATGGTGAAAGAGTCCAAGTACAC 121575 Query 49360 AAAAAGCGCGAGCGTTTTCAATTCTATTCAAGATCTTTAAAGTCTGTGAGCGCACATAAA 49419 || ||| | | ||| | | || ||||||||| || || |||||| ||||||||| Sbjct 121574 AAGAAGGGGCATGAATTTAAGTACTTTTCAAGATCATTGAAACCTGTGATGGCACATAAA 121515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434908646954880