Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq996 801 0.0 seq997 306 2e-78 >seq996 Length=29639 Score = 801 bits (888), Expect = 0.0 Identities = 785/1004 (78%), Gaps = 26/1004 (3%) Strand=Plus/Minus Query 64921 TCATTATATCCATTTAACTAAGAGGACAATGCGGCATGAGTATACCCGCTAATGG-ACTG 64979 || ||||||||||||||||||| |||| | |||||| ||||||| | | || | ||| Sbjct 20568 TCGTTATATCCATTTAACTAAGGGGACGAGGCGGCACGAGTATAGC-GTTATTTACACTT 20510 Query 64980 CGGGGTAAGTACGCTGCCGCTCGATTGCTTAAACCCTCGCCATTTATGCCGGGTTTTTAT 65039 | | |||| | ||||| || |||| ||| || ||||| | ||| |||| Sbjct 20509 TGCGTTAAGCGCATCGCCGCCTGACTGCTCAAAGAGTCACCATTCAGCCCG---TTTT-- 20455 Query 65040 CATTTTTCTTAATGTTTTCCGCACGTTCTGCTT-----TTTGGCGTGCTTCTGCTTTGCG 65094 |||| | |||| | | | | |||| ||| ||| || || |||||||| Sbjct 20454 --TTTTGCCTAAT----TGCCCTCATTCT-CTTGCGCCTTTAGC-----TCAGCTTTGCG 20407 Query 65095 CTTGTTGCTCATGTCGTTACGGATCTGTGCATGACTCATTAACGCGAAGATAAAGGTGCC 65154 ||||| ||||||||||||||| |||||||| || | | |||||||||||| || || Sbjct 20406 TTTGTTAGACATGTCGTTACGGATTTGTGCATGGCTTAACAGCGCGAAGATAAACGTTCC 20347 Query 65155 GCCGCAGATGTTCCCCGCTAAAGTAGGTAGTGCGAAGGGCCAGATGAAATCGCTCCAGTG 65214 ||||||||| ||||| || | || || || ||||| ||||||| ||||| |||||||| Sbjct 20346 GCCGCAGATATTCCCGGCCAGCGTCGGAAGGGCGAACGGCCAGAAAAAATCACTCCAGTG 20287 Query 65215 CAGCGTACCGTTAAACACCAGATAGAGGATTTCAACAGAACCGACAACGATGTGAGTGGT 65274 |||||||| ||||| ||||||||||| |||||||| | |||||| || || || ||||| Sbjct 20286 AAGCGTACCATTAAAGACCAGATAGAGTATTTCAACGGTACCGACCACAATATGCGTGGT 20227 Query 65275 GTCACCCAGGGCAATAAGCCAGGTCATCAATATAATCACCACAATCTTTGCCGCACCC-G 65333 ||| |||||||||| ||||||||||||| ||| ||||||||||| |||| ||| || | Sbjct 20226 GTCCGCCAGGGCAATCAGCCAGGTCATCAGTATGATCACCACAAT-TTTGGCGCTGCCTG 20168 Query 65334 CTGCAGGAAACATCCATACCATAGTGGCGATCAGCCAGCCGGAAATGATCGCGTTGGCAA 65393 | | |||||||||||| ||||| |||||||| | ||||||||| ||||| ||||| || | Sbjct 20167 CAGAAGGAAACATCCACACCATCGTGGCGATAATCCAGCCGGAGATGATGGCGTTTGCGA 20108 Query 65394 ACATCTCGCTGGGGGTGTTCTTCATCACATCCATGCCGATTTTGACAAATGCATCGCGAG 65453 |||| ||| || ||||| |||||||| |||||||| ||||| ||||| ||||| || | Sbjct 20107 ACATTTCGGCCGGCGTGTTTTTCATCACGTCCATGCCAATTTTCACAAACGCATCCCGGG 20048 Query 65454 TTTCTTCATTGAAGATTGGCATATATTCAAATGCCCACGCCGCAATACCTGTCCCGAGAA 65513 | ||||| ||||| |||||||||||||| ||||| || || ||||| || || | || Sbjct 20047 TAGGTTCATCAAAGATCGGCATATATTCAAACGCCCAGGCGGCGATACCCGTGCCTATAA 19988 Query 65514 TATTACCCAGCAGCACGACGCCCCATAACCGCATAAGTAAGCCAACGTTGCTCATTGTCG 65573 | ||||||||||| || |||||||| || |||| | ||| || | |||| | || | Sbjct 19987 TGTTACCCAGCAGGACCACGCCCCACAAACGCAACAATAAACCGAAATTGCCGAGGGTTG 19928 Query 65574 GTTTTTGCATGACGGGTAGTACCGCAGTCACGGTGTTTTCGGTAAATAATTGCTGGCGGG 65633 | |||||||| || || || || |||||||| |||||||| ||||| | |||||||||| Sbjct 19927 GATTTTGCATCACTGGCAGAACGGCAGTCACCGTGTTTTCAGTAAACAGCTGCTGGCGGG 19868 Query 65634 CCATAATGACGATAATAAAACCAAAGGTATAACCGAGATTCTCCAGCAAGAAGCTGCCCG 65693 |||| ||||| |||||||| || |||||||| ||||| |||||||| || || | ||| | Sbjct 19867 CCATGATGACAATAATAAAGCCGAAGGTATAGCCGAGGTTCTCCAGTAAAAAACCGCCGG 19808 Query 65694 GCACACCTTCCAGTTCGACATGAAATATCCCTTTTGCCAGTAATGAAGCGCCCATCGACA 65753 | ||||| || |||| |||||||||||||||||||| || | ||| |||||||| |||| Sbjct 19807 GGACACCCTCAAGTTGAACATGAAATATCCCTTTTGCGAGCAGTGACGCGCCCATTGACA 19748 Query 65754 GACCCGCCGCAATGGCTGACCACAGTAGTGCCATTGCGTCGCGTTCCAGCTCTTTTTCAC 65813 | ||||| || ||||||||||| | || ||||| || ||||| |||| ||| ||||| | Sbjct 19747 GTCCCGCAGCGATGGCTGACCAGAAGAGGGCCATGGCATCGCGCTCCATCTCCTTTTCGC 19688 Query 65814 CATCCTGGCGGATATGCTCATGAATTGCCATCGCCCGGGAGGGGAGTCGATCTTCATCTA 65873 |||||||||| ||||| || |||||||||||||| ||||||||||| ||||||||||| | Sbjct 19687 CATCCTGGCGTATATGTTCGTGAATTGCCATCGCGCGGGAGGGGAGGCGATCTTCATCAA 19628 Query 65874 TTTCTAtttttttGCCACGCTCTTTTTCTTCGCTCTCAACTTCA 65917 |||||| || | ||| ||| |||| || |||||||||| |||| Sbjct 19627 CTTCTATCTTCTCGCCGCGCGCTTTCTCCTCGCTCTCAATTTCA 19584 Score = 122 bits (134), Expect = 4e-23 Identities = 70/72 (97%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 1323 TGTCCCCTGCAGGAATCGAACCTGCAATTAGCCCTTAGGAGGGGCTCGTTATATCCATTT 1382 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 20613 TGTCCCCTGCAGGAATCGAACCTGCAACTAGCCCTTAGGAGGGGCTCGTTATATCCATTT 20554 Query 1383 AACTAAGAGGAC 1394 ||||||| |||| Sbjct 20553 AACTAAGGGGAC 20542 >seq997 Length=29618 Score = 306 bits (338), Expect = 2e-78 Identities = 374/508 (74%), Gaps = 13/508 (3%) Strand=Plus/Minus Query 32117 CTGCCGTTCTGGCGCTG--ATTGCCGCAGGTGCTTCTGCGCCTGAAATCCTCGACCAGTT 32174 |||| ||||||| |||| |||| || |||||| |||| | | ||| ||||| ||||| Sbjct 20900 CTGCAGTTCTGGGGCTGGTATTG--GCTGGTGCTCCTGCATCCGTAATTCTCGATCAGTT 20843 Query 32175 TCTGGATGAAAAGGAAGGTAACCACACCACGGCATACCGTGATGGTGCGGGTATCTGGAC 32234 |||| ||||||| || |||||| | |||||| ||| ||||||| ||||| ||||| Sbjct 20842 TCTGAATGAAAAAGAGGGTAACAGCCTCACGGCCTACAAAGATGGTGGTGGTATTTGGAC 20783 Query 32235 CATCTGCCGTGGAGCCACCCGGGTGGATGGTAAGCCTGTGATTCCTGGCATGAAGCTGTC 32294 || ||||| || || || ||| ||| |||| || || | | |||||||| || | Sbjct 20782 TATTTGCCGCGGCGCAACGATGGTTGATCGTAAACCGGTTGTGCAGGGCATGAAATTGAC 20723 Query 32295 GAAGGAAAAATGCGACCGGGTTAACGCTATCGAACGGGATAAGGCGCTGGCATGGGTGGA 32354 ||| |||||| | | ||| || ||||||||||| ||||||| ||||||||||| || Sbjct 20722 ACAGGCCAAATGCAATCTGGTGAATGCTATCGAACGCAATAAGGCTCTGGCATGGGTTGA 20663 Query 32355 GCGTAATATAAAAGTTCCACTGACCGAGCCACAAAAAGCAGGTATCGCGTCATTTTGCCC 32414 || ||||| || || || ||||| || || ||||| || ||||| || || || || Sbjct 20662 CCGCAATATTTCGGTACCGCTTACCGAACCGCAGAAAGCTGGAATCGCATCTTTCTGTCC 20603 Query 32415 CTATAACATTGGCCCCGGTAAGTGTTTCCCGTCGACGTTTTATAAGCGGCTTAATGCAGG 32474 || ||||| || || |||||||| |||||||| ||||| |||||||| | ||||| || Sbjct 20602 GTACAACATCGGGCCGGGTAAGTGCTTCCCGTCAACGTTCTATAAGCGCATCAATGCCGG 20543 Query 32475 CGATCGCAGGGGAGCGTGTGAGGCGATTCGCTGGTGGATTAAGGACGGTGGCAGAGACTG 32534 || ||| || || || ||||| |||||||||||||||| |||| |||| | ||||| Sbjct 20542 TGACCGCCCCGGGGCATGCGAGGCAATTCGCTGGTGGATTAGAGACGCTGGCCGCGACTG 20483 Query 32535 CCG------TA---TCCGTTCAAACAACTGTTACGGTCAGGTATCAAGACGTGACCAGGA 32585 ||| || || ||| ||| |||||||||||| | | || |||||||| Sbjct 20482 CCGCCTGACTAAAGGCCAGAAGAACGGCTGCTACGGTCAGGTAGAACGGCGAGACCAGGA 20423 Query 32586 GAGTGCGCTGGCATGCTGGGGTATCGAC 32613 ||||| |||| |||||||| || ||| Sbjct 20422 AAGTGCTTTGGCGTGCTGGGGGATAGAC 20395 Score = 158 bits (174), Expect = 5e-34 Identities = 239/336 (71%), Gaps = 18/336 (5%) Strand=Plus/Minus Query 35002 AATCATTACCGCGATAACGCCATAACCTACAAAGAGCAGCGCGATAAAAAAGTCAGTGAG 35061 || || || ||||| |||||||| |||||||||||||||||||||||| | || |||| Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAA---GCCACTGAG 18129 Query 35062 ---CTGGAGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATGTTGCT 35118 || | ||| || || ||||| | || |||||| ||||||||||||| ||| Sbjct 18128 AAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCT 18069 Query 35119 GCACTTGATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTT 35178 || || ||||||| |||| | | ||| || ||||||| || | | ||| ||| Sbjct 18068 GCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTG 18009 Query 35179 C---GCGCTGACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAGGT 35235 | ||| || | |||| | || | || |||| | ||||||| | |||||| | Sbjct 18008 CATAGCGATGTCATTGCTGGCCGTAAGCGG---CTGCAGCTCAACGCAAACTGTCCCG-- 17954 Query 35236 CCCGTGCGTGAAGCCACCGGCACCGCCCGCGTGGATAATGCAACCGGCCCCCGACTGGCA 35295 || || ||| |||||||||| | || ||| |||| |||||||| |||| | Sbjct 17953 --CGAACGG--AGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACT 17898 Query 35296 GACACCGCTGAACGGGATTATTTCACCCTCAGAGAG 35331 ||| ||||||||||||||||||||| ||||||| || Sbjct 17897 GACTCCGCTGAACGGGATTATTTCATCCTCAGAAAG 17862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210926588121144