Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq960 242 1e-59 seq813 111 6e-20 >seq960 Length=33163 Score = 242 bits (268), Expect = 1e-59 Identities = 765/1165 (66%), Gaps = 29/1165 (2%) Strand=Plus/Minus Query 23631 TCCTGGCTGTTGGTTAGGATCGCCCATTTTCCGCGCCGCTGGGCCTCACTCTCGCGGGTG 23690 ||| ||| |||||| || | ||||||||| ||| |||||||||| || | |||| Sbjct 13674 TCCAGGCGGTTGGTCAGCAGCGCCCATTTGCCGATGCGCTGGGCCTGGGCCTGGGAGGTG 13615 Query 23691 CAGCCAATGGCTGCCACCTCGACCGGGTTGTCGCCGTAACGC-CGCTGCAGGCGCTTATC 23749 ||||| |||| | | |||| | | | |||| ||||| || ||| | | ||| Sbjct 13614 CAGCCGGTGGCGGTGATCTCGGTCTGCTGCACGCCATAACGGGCGATGCCTTC-CGGATC 13556 Query 23750 GGTGGCC-ACAGCCACGTCGGTGTCG-TAGTTGTTCGCCGGATTGTCGTAGCTGACCAAG 23807 | | | || || | || || || ||| || |||||| | || |||| |||| | Sbjct 13555 GTCGACGTACTGCACCTTC--TGCCGGTAGAAGTCCGCCGGGTCGTTCCAGCTCACCAGG 13498 Query 23808 GCACGGCTGTAGCGAGTGCGCTCACTGGCCGAGCC---GTAGCTGAAGCGGCCGTCGATG 23864 || ||||||||| || || | |||||||| |||| ||| ||||||||| Sbjct 13497 GCCACGCTGTAGCGGGT---CTTTTTCGCCGAGCCACCGTAGACGAACTTGCCGTCGATC 13441 Query 23865 ACATTGGCCCTGGTGTAGGCGAAATCGACGTCGGTGGCGCGCGGGATATCCGCCTGGATC 23924 || ||||| || |||||| | | | ||| | | ||| || || ||| | Sbjct 13440 ACGTTGGCGTTGCTGTAGGTGTACAC-----CGG-GTCTTCCGGCATGTCGGCCACCGCC 13387 Query 23925 TTCAGTTGGCCCTGGGCCCAGTACGCCATACCACGGTAGATAGCGGTGAGGTCGCGCAGC 23984 ||| ||| | |||| || ||||| || ||| || | | || ||||| ||||| Sbjct 13386 ATCACCGAGCCTGCGCCCCAATAGGCCATGCCGCGGAAGGTGGTGGCCAGGTCCTGCAGC 13327 Query 23985 AGCTCCCAG-GCCCCGGCGCGGCTTTGCAGGTTCAGGTTGCAGGTGTGTCGCGGCTCCTG 24043 | || ||| || ||||||| || | ||||||||||| |||||||| Sbjct 13326 A-CTTTCAGCGCATCGGCGCGCACCGAGAGATAGAGGTTGCAGGTAAAGCGCGGCTCGGT 13268 Query 24044 GCCACCCTTCCCATCCGGCACCAACTGGTCGCAGTACTGGGAAATCCGGTACATCTCCCA 24103 ||| ||||| ||||| | |||| |||||||||||||||| || ||||||| |||||| Sbjct 13267 GCCGCCCTTGCCATCGGACACCGGCTGGTCGCAGTACTGGCCGATGCGGTACAGCTCCCA 13208 Query 24104 GCGATCGACCATCCAAGCCTTGATGCGTTTACCCACACCGAAGCGATCGTTGGTCACGAT 24163 || ||| || |||| | | || | || | || | || || | Sbjct 13207 CTTGTCCACCTGGGCGGCGTTGAGCAGGTGCCCGAGGCCATAACGCTGGTGCAGCAGCAG 13148 Query 24164 GTCGTAGGTGTGCCAGACCGGGTTGTCGGTCCAGGCCTGTTTCATCGTGCCGTCCCAGAT 24223 ||||||| | |||| |||||||||||||||||||| || | ||||||||||| | Sbjct 13147 GTCGTAGTAGATCCAGGCCGGGTTGTCGGTCCAGGCCGACTTGAAGGTGCCGTCCCACAC 13088 Query 24224 GCCGAGGTAGGCCCGGGTCTCCGGATCGTAATTGCTCGGCACTTGGACCTTCCGCCCGCG 24283 |||| ||||| |||||| |||||||||| ||||| ||||| ||| ||||||| | Sbjct 13087 GCCGCTGTAGGTCCGGGTGGCCGGATCGTAGTTGCTTGGCACGCGGATGATCCGCCCTTG 13028 Query 24284 GCAGTCGACTGTGACAGCCGGAATGTTGCTGAACTGCTCTGCGCTGAACTCGACGTACAG 24343 | |||| | | ||||| ||||||| || ||||| | | | Sbjct 13027 CAATTCGAAGGAGCGGTTGGGAATCGACTGGAACTGCGAGGCATCGAACTGCAGGCCGAT 12968 Query 24344 CAGGGCCGTGTTCGGGTAGCGCAGCTTCGCGTCGATCACCTCGGTG-TAGCCGGCGATCA 24402 | |||| ||||||||||| ||| ||||||||||| |||||| | | | | | Sbjct 12967 GATCGCCGAACCCGGGTAGCGCAACTTGGCGTCGATCACGTCGGTGATGGACTCCACGCT 12908 Query 24403 GCATGGTGTCGGCGATGCGGTTGTTGTTCTGGTTCGGCGTCAGGCGGCGGACGCGCACCT 24462 | |||| |||||||| | || | ||||| |||||| || || || ||||| Sbjct 12907 GG-TGGTATCGGCGATCGCCCCGCTGCTGGAGTTCGCCGTCAGCCGCCGCACCCGCACGG 12849 Query 24463 GCCAGCCATTGGTGGCCGCCGGCAGGTCGATCCGGCGGGAACGCTCGTAGCGGGTGGTGG 24522 |||||| ||||||| |||||||||| |||| |||| |||||||| | ||| | Sbjct 12848 TCCAGCCGGCCTTGGCCGCTGGCAGGTCGACCCGGTGGGAGCGCTCGTACTTGCTGGAGC 12789 Query 24523 TCTTGCCATCGACGGCCTCGCGCAGCACCTCCTGATAGGCGCCGCCGTCGGTGGCCAGAT 24582 ||||||| || |||| ||||||| || | || ||||||||||||| ||| | Sbjct 12788 TCTTGCCGCTGAAGGCCGACTGCAGCACTTCGACGAACGCCCCGCCGTCGGTGGACAGCT 12729 Query 24583 CTACGGCATATTCGATCCG-GTACCCGCCGATGTTGCCGTTGGT-GTCCTGCTGCTGGAG 24640 | | ||| || || ||| ||| ||| | ||| ||||||| | || || | |||| Sbjct 12728 CGATGGCGTA-ACGCACCGTGTAGCCGTTGGTGTCGCCGTTGCTGGTGTTGGT-CTGGGC 12671 Query 24641 CGCTGGCCAG---GCGAAGCGCAGGCGCACTGCGGAAAGCTGGGTATTGCTCAGCGAGCG 24697 | || || || | ||| | |||||| || || || || ||| | | | ||| Sbjct 12670 CAGGCGCGAGACCGCCAGGCGGATGCGCACCGCCGACAGTTGCAGGTTGGTGATGGCGCG 12611 Query 24698 CACCCAGGGCGTATCGCTGCGCAACTCGACGTTGACGCTGGTTTCGTTCTCAACGGCAGG 24757 |||||| |||||||||| || || || || |||||||| || || || Sbjct 12610 GGTCCAGGGTTGGTCGCTGCGCAGTTCCACCGCCACCTGGGACTCGTTCTCCACCGCCGG 12551 Query 24758 GATGCCCGGGATGTAGTCCTGGTCC 24782 | ||||||||||||| ||||||| Sbjct 12550 AAAGCCCGGGATGTAGGTCTGGTCC 12526 Score = 86.0 bits (94), Expect = 2e-12 Identities = 194/285 (68%), Gaps = 14/285 (5%) Strand=Plus/Minus Query 30530 AGTGTCATGGATGGAATGCCTGTTCAAAGGTCGCGGTCAGCCGGTAGA-CCCGGCCACCG 30588 || ||||||||||||| |||||||| ||||| ||| | || ||| | ||| || || Sbjct 5241 AGGGTCATGGATGGAAGGCCTGTTCGAAGGTGGCGCTGAGGGTGTACATCCCTGCGCCCA 5182 Query 30589 AGGTTGACGGGCCGGTAGCCCGCACAGGTGTAGAAGCCCAAGTCGCCCAGGGGCGGCGTC 30648 | | || |||| ||||| | ||| ||| | ||| || |||||||| || ||| Sbjct 5181 ACGGCGA-GGGCTGGTAGGTCTTGCAGCGGTACAGCCCCTGTTCTCCCAGGGGTGGGGTC 5123 Query 30649 CAG-AGAAATGCACGCGCTCCGGTGTGGCGGTCCAGGAAGTCCATCACGGCCTTGAT--G 30705 ||| |||| || | || ||| ||| ||| | |||| | || | | |||||| | Sbjct 5122 CAGTAGAACGGCGTG-GCGCCGCGATGGGCGTCGATGAAGGCGATGATCGGCTTGATCCG 5064 Query 30706 G---TCGCCGCCGGCCCGGTGATGGACACCGGCCAGCTCTGGGACTTGCTGTTCAGACCT 30762 | ||| ||||| | || || || ||||||| ||||| |||| |||| | || Sbjct 5063 GCTTTCGTCGCCGAC-----GAAGGTCAGCGGCCAGGACTGGGTCTTGTTGTTGATGCCG 5009 Query 30763 TCGCTCACCAACTGCTTGTAGCCGTCACCGAATTGCGCGGACCTG 30807 || |||| ||||| ||||||||| ||||| | || ||| || Sbjct 5008 TCCTGGACCACCTGCTGGTAGCCGTCGCCGAAGCGGGCCGACTTG 4964 >seq813 Length=55966 Score = 111 bits (122), Expect = 6e-20 Identities = 225/334 (67%), Gaps = 0/334 (0%) Strand=Plus/Minus Query 7276 AGAGGTGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTAC 7335 ||||| || ||||| || ||||| || ||||| | || ||||||||| |||||| Sbjct 13774 AGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTAC 13715 Query 7336 ATGCCCAACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGAC 7395 ||||| | || || || ||||||| || || || || ||| |||| || Sbjct 13714 ATGCCGAGTGGTGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGAT 13655 Query 7396 AAGCAGACCGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCGC 7455 || |||||| || | || | | || | |||||||||||| | || || Sbjct 13654 AAAGCGACCGGTGAGATGAAAGAGCAGACTGAATGGCACCGCGTGGTGCTGTTTGGCAAA 13595 Query 7456 CTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAGC 7515 ||||| || | ||||| ||||| ||||| || ||||| |||||||| |||||||| Sbjct 13594 CTGGCAGAAGTTGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATCGAAGGCCAA 13535 Query 7516 CTGCGCACCCGCAAGTGGCAGGCTCAGGACGGCCAGGACCGATACACCACCGAGGTAATC 7575 ||||||||||| || ||| | |||| |||| || ||||||||||| || | Sbjct 13534 CTGCGCACCCGTAAATGGACCGATCAGTCCGGCGCTGAGAAGTACACCACCGAAGTTGTG 13475 Query 7576 GTCGACATGCACGGACAGATGCAGATGCTTGGCG 7609 || || | ||| ||||||||||| |||| Sbjct 13474 GTAAACGTTGGCGGTACCATGCAGATGCTGGGCG 13441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194815049620468