Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_028660.1
Length=61035
Score E
Sequences producing significant alignments: (Bits) Value
seq997 304 5e-78
>seq997
Length=29618
Score = 304 bits (336), Expect = 5e-78
Identities = 376/510 (74%), Gaps = 17/510 (3%)
Strand=Plus/Plus
Query 4856 GTCGATACCCCAGCATGCCAGCGCACTCTCCTGGTCGCGACGGGATACCTGACCGTAGCA 4915
||| || |||||||| |||| ||||| |||||||| || || |||||||||||||||
Sbjct 20395 GTCTATCCCCCAGCACGCCAAAGCACTTTCCTGGTCTCGCCGTTCTACCTGACCGTAGCA 20454
Query 4916 A---TTATTTGAGCGGATA------CGGCAGTCTCTGCCACCGTCCTTAATCCACCAGCG 4966
|| || || || |||||||| | |||| |||| |||||||||||||
Sbjct 20455 GCCGTTCTTCTGGCCTTTAGTCAGGCGGCAGTCGCGGCCAGCGTCTCTAATCCACCAGCG 20514
Query 4967 AATCGCTTCACACGCTCCCCTGCGATCGCCTGCATTAATTCGTTTATAAAACGTCGACGG 5026
||| || || || || || ||| || || ||||| || || ||||| ||||| |||||
Sbjct 20515 AATTGCCTCGCATGCCCCGGGGCGGTCACCGGCATTGATGCGCTTATAGAACGTTGACGG 20574
Query 5027 GAAACACTTACCGGGGCCAATGTTGTAAGGACAGAATGACGCGATCCCCGCTTTCTGAGG 5086
||| |||||||| || || |||||||| |||||||| || ||||| || |||||||| ||
Sbjct 20575 GAAGCACTTACCCGGCCCGATGTTGTACGGACAGAAAGATGCGATTCCAGCTTTCTGCGG 20634
Query 5087 TTCGGTCAGTGGCACTCTGATGTTTTTCG--CCACCCATGCCAGCGCCTTATCACGTTCA 5144
|||||| || || | | || | || || | ||||||||||| ||||||| |||||
Sbjct 20635 TTCGGTAAGCGGTA--CCGAAATATTGCGGTCAACCCATGCCAGAGCCTTATTGCGTTCG 20692
Query 5145 ATGGCGTTAACCTGGTCGCATTTTTCCTTCGACAACTTCATGCCGGGGACGACAAGCTTA 5204
|| || || ||| | | |||||| ||| | ||| |||||||| | || || | |||
Sbjct 20693 ATAGCATTCACCAGATTGCATTTGGCCTGTGTCAATTTCATGCCCTGCACAACCGGTTTA 20752
Query 5205 CCATCCACCTGGGTGGCACCACGGCAGATGGTCCAGATACCCACACCATCACGGTATGCC 5264
| ||| ||| || || || ||||| || ||||| ||||| ||||||| ||| |||
Sbjct 20753 CGATCAACCATCGTTGCGCCGCGGCAAATAGTCCAAATACCACCACCATCTTTGTAGGCC 20812
Query 5265 GTGGTGTGGTTGCCTTCCTTTTCATCCAGAAACTGGTCGAGGATTTCAGGCGCAGAAGCA 5324
||| | ||| || || ||||||| ||||||||| ||||| ||| | | |||| ||||
Sbjct 20813 GTGAGGCTGTTACCCTCTTTTTCATTCAGAAACTGATCGAGAATTACGGATGCAGGAGCA 20872
Query 5325 CCTGCGGCAAT--CAGCGCCAGAACGGCAG 5352
|| || |||| |||| ||||||| ||||
Sbjct 20873 CCAGC--CAATACCAGCCCCAGAACTGCAG 20900
Score = 122 bits (134), Expect = 3e-23
Identities = 264/400 (66%), Gaps = 24/400 (6%)
Strand=Plus/Plus
Query 3412 aaaaaaaTTATTTCAGGCATTGCGTCCTGATGTATTCCTGCAGGTAGTTAACCTGCGCAG 3471
||||| |||||| | ||| || || || ||||| | |||||| ||| |||||| |
Sbjct 17786 AAAAACTTTATTTTAAGCACTGAGTGCTTATGTAGTTCTGCAGATAGCCGACCTGCTTCG 17845
Query 3472 TTATCTTGTCGATTCCACTTCTGAGACGGTAATAATTGAGTTCAGCATCTGCTGTAAGTC 3531
| | || |||||| ||||||| | |||||| ||||||| | |||||||
Sbjct 17846 TCACTGTGACGATTCGCTTTCTGAGGATGAAATAATCCCGTTCAGCGGAGTCAGTAAGTC 17905
Query 3532 CTGGGCTTTCTCCATCGCCCATGCTGCTGGCTCCGGTCGTTGACTTTGC---ACAGGTGG 3588
|||| |||||||||||| || || ||||||| | || || |||| | |
Sbjct 17906 TGGGGCCGGAAGCATCGCCCATGCCGCCGGTGCCGGTCGCTCCGTTCGCGGGACAGTTTG 17965
Query 3589 CGGCGACTTGCAGGCGCTTACGCCCAGCAGAAACATCAGCACGGAGACTTTCGATAGTCG 3648
|| || ||||| |||||||| |||||| ||||| | | |||| || || |
Sbjct 17966 CGTTGAGCTGCAGCCGCTTACGGCCAGCAATGACATCGCTATGCAGACGCTCAATGATAT 18025
Query 3649 CATTAGCATCAGCAAGCTCCTTTGTGTATCTGGCGTCAAGTTCTGCTACATCACGTTGCC 3708
| || |||||||| | || |||||| |||| || || | || ||||||| || |
Sbjct 18026 CTTTCGCATCAGCCGGTTCTCCAGTGTATTTGGCATCCAGCGCAGCGGCATCACGCTGGC 18085
Query 3709 GCTTCTGCATATCTGCGATGATGG---------------------ATGTGGCTTTATCGC 3747
| ||||||| ||| |||| ||| |||||||||||||
Sbjct 18086 GGGTCTGCATGTCTTTGATGGTGGCGTTGGCCTGGCTGAGTTTCTCAGTGGCTTTATCGC 18145
Query 3748 GCTGCTCTTTGTAAGCGATGGCGTTATCACGGTAATGATT 3787
||||||||||||| | ||||||||| || || || || ||
Sbjct 18146 GCTGCTCTTTGTAGGTGATGGCGTTGTCGCGATAGTGGTT 18185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 195186241712516
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |