Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq997 304 5e-78 >seq997 Length=29618 Score = 304 bits (336), Expect = 5e-78 Identities = 376/510 (74%), Gaps = 17/510 (3%) Strand=Plus/Plus Query 4856 GTCGATACCCCAGCATGCCAGCGCACTCTCCTGGTCGCGACGGGATACCTGACCGTAGCA 4915 ||| || |||||||| |||| ||||| |||||||| || || ||||||||||||||| Sbjct 20395 GTCTATCCCCCAGCACGCCAAAGCACTTTCCTGGTCTCGCCGTTCTACCTGACCGTAGCA 20454 Query 4916 A---TTATTTGAGCGGATA------CGGCAGTCTCTGCCACCGTCCTTAATCCACCAGCG 4966 || || || || |||||||| | |||| |||| ||||||||||||| Sbjct 20455 GCCGTTCTTCTGGCCTTTAGTCAGGCGGCAGTCGCGGCCAGCGTCTCTAATCCACCAGCG 20514 Query 4967 AATCGCTTCACACGCTCCCCTGCGATCGCCTGCATTAATTCGTTTATAAAACGTCGACGG 5026 ||| || || || || || ||| || || ||||| || || ||||| ||||| ||||| Sbjct 20515 AATTGCCTCGCATGCCCCGGGGCGGTCACCGGCATTGATGCGCTTATAGAACGTTGACGG 20574 Query 5027 GAAACACTTACCGGGGCCAATGTTGTAAGGACAGAATGACGCGATCCCCGCTTTCTGAGG 5086 ||| |||||||| || || |||||||| |||||||| || ||||| || |||||||| || Sbjct 20575 GAAGCACTTACCCGGCCCGATGTTGTACGGACAGAAAGATGCGATTCCAGCTTTCTGCGG 20634 Query 5087 TTCGGTCAGTGGCACTCTGATGTTTTTCG--CCACCCATGCCAGCGCCTTATCACGTTCA 5144 |||||| || || | | || | || || | ||||||||||| ||||||| ||||| Sbjct 20635 TTCGGTAAGCGGTA--CCGAAATATTGCGGTCAACCCATGCCAGAGCCTTATTGCGTTCG 20692 Query 5145 ATGGCGTTAACCTGGTCGCATTTTTCCTTCGACAACTTCATGCCGGGGACGACAAGCTTA 5204 || || || ||| | | |||||| ||| | ||| |||||||| | || || | ||| Sbjct 20693 ATAGCATTCACCAGATTGCATTTGGCCTGTGTCAATTTCATGCCCTGCACAACCGGTTTA 20752 Query 5205 CCATCCACCTGGGTGGCACCACGGCAGATGGTCCAGATACCCACACCATCACGGTATGCC 5264 | ||| ||| || || || ||||| || ||||| ||||| ||||||| ||| ||| Sbjct 20753 CGATCAACCATCGTTGCGCCGCGGCAAATAGTCCAAATACCACCACCATCTTTGTAGGCC 20812 Query 5265 GTGGTGTGGTTGCCTTCCTTTTCATCCAGAAACTGGTCGAGGATTTCAGGCGCAGAAGCA 5324 ||| | ||| || || ||||||| ||||||||| ||||| ||| | | |||| |||| Sbjct 20813 GTGAGGCTGTTACCCTCTTTTTCATTCAGAAACTGATCGAGAATTACGGATGCAGGAGCA 20872 Query 5325 CCTGCGGCAAT--CAGCGCCAGAACGGCAG 5352 || || |||| |||| ||||||| |||| Sbjct 20873 CCAGC--CAATACCAGCCCCAGAACTGCAG 20900 Score = 122 bits (134), Expect = 3e-23 Identities = 264/400 (66%), Gaps = 24/400 (6%) Strand=Plus/Plus Query 3412 aaaaaaaTTATTTCAGGCATTGCGTCCTGATGTATTCCTGCAGGTAGTTAACCTGCGCAG 3471 ||||| |||||| | ||| || || || ||||| | |||||| ||| |||||| | Sbjct 17786 AAAAACTTTATTTTAAGCACTGAGTGCTTATGTAGTTCTGCAGATAGCCGACCTGCTTCG 17845 Query 3472 TTATCTTGTCGATTCCACTTCTGAGACGGTAATAATTGAGTTCAGCATCTGCTGTAAGTC 3531 | | || |||||| ||||||| | |||||| ||||||| | ||||||| Sbjct 17846 TCACTGTGACGATTCGCTTTCTGAGGATGAAATAATCCCGTTCAGCGGAGTCAGTAAGTC 17905 Query 3532 CTGGGCTTTCTCCATCGCCCATGCTGCTGGCTCCGGTCGTTGACTTTGC---ACAGGTGG 3588 |||| |||||||||||| || || ||||||| | || || |||| | | Sbjct 17906 TGGGGCCGGAAGCATCGCCCATGCCGCCGGTGCCGGTCGCTCCGTTCGCGGGACAGTTTG 17965 Query 3589 CGGCGACTTGCAGGCGCTTACGCCCAGCAGAAACATCAGCACGGAGACTTTCGATAGTCG 3648 || || ||||| |||||||| |||||| ||||| | | |||| || || | Sbjct 17966 CGTTGAGCTGCAGCCGCTTACGGCCAGCAATGACATCGCTATGCAGACGCTCAATGATAT 18025 Query 3649 CATTAGCATCAGCAAGCTCCTTTGTGTATCTGGCGTCAAGTTCTGCTACATCACGTTGCC 3708 | || |||||||| | || |||||| |||| || || | || ||||||| || | Sbjct 18026 CTTTCGCATCAGCCGGTTCTCCAGTGTATTTGGCATCCAGCGCAGCGGCATCACGCTGGC 18085 Query 3709 GCTTCTGCATATCTGCGATGATGG---------------------ATGTGGCTTTATCGC 3747 | ||||||| ||| |||| ||| ||||||||||||| Sbjct 18086 GGGTCTGCATGTCTTTGATGGTGGCGTTGGCCTGGCTGAGTTTCTCAGTGGCTTTATCGC 18145 Query 3748 GCTGCTCTTTGTAAGCGATGGCGTTATCACGGTAATGATT 3787 ||||||||||||| | ||||||||| || || || || || Sbjct 18146 GCTGCTCTTTGTAGGTGATGGCGTTGTCGCGATAGTGGTT 18185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195186241712516