Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_028685.1 Length=62851 Score E Sequences producing significant alignments: (Bits) Value seq997 311 3e-80 >seq997 Length=29618 Score = 311 bits (344), Expect = 3e-80 Identities = 372/503 (74%), Gaps = 13/503 (3%) Strand=Plus/Minus Query 30132 GTTCTGGCGCTG--ATTGCCGCAGGGGCTTCTGCGCCTGAAATCCTGGATCAGTTTCTGG 30189 ||||||| |||| |||| || || ||| |||| | | ||| || |||||||||||| Sbjct 20895 GTTCTGGGGCTGGTATTG--GCTGGTGCTCCTGCATCCGTAATTCTCGATCAGTTTCTGA 20838 Query 30190 ATGAAAAAGAAGGTAACCACACCACGGCATACCGTGATAGTGCGGGTATCTGGACCATCT 30249 |||||||||| |||||| | |||||| ||| ||| ||| ||||| ||||| || | Sbjct 20837 ATGAAAAAGAGGGTAACAGCCTCACGGCCTACAAAGATGGTGGTGGTATTTGGACTATTT 20778 Query 30250 GCCGTGGAGCCACCCGGGTGGATGGTAAGCCTGTTATTCCTGGCATGAAGCTGTCGAAGG 30309 |||| || || || ||| ||| |||| || ||| | | |||||||| || | ||| Sbjct 20777 GCCGCGGCGCAACGATGGTTGATCGTAAACCGGTTGTGCAGGGCATGAAATTGACACAGG 20718 Query 30310 AAAAATGCGACCGGGTTAACGCCATTGAGCGTGATAAGGCGCTGGCATGGGTGGAGAAAA 30369 |||||| | | ||| || || || || || ||||||| ||||||||||| || | Sbjct 20717 CCAAATGCAATCTGGTGAATGCTATCGAACGCAATAAGGCTCTGGCATGGGTTGACCGCA 20658 Query 30370 ACATCAAAGTGCCACTGACTGAACCCCAGAAAGCGGGGATCGCGTCATTCTGCCCGTATA 30429 | || || || || || ||||| |||||||| || ||||| || ||||| ||||| | Sbjct 20657 ATATTTCGGTACCGCTTACCGAACCGCAGAAAGCTGGAATCGCATCTTTCTGTCCGTACA 20598 Query 30430 ACATTGGCCCCGGTAAGTGTTTCCCGTCGACGTTTTATAAACGAATTAATGCAGGCGATC 30489 |||| || || |||||||| |||||||| ||||| ||||| || || ||||| || || | Sbjct 20597 ACATCGGGCCGGGTAAGTGCTTCCCGTCAACGTTCTATAAGCGCATCAATGCCGGTGACC 20538 Query 30490 GCCGGGGTGCATGCGAGGCGATTCGCTGGTGGATTAAAGACGGTGGCAGAGACTGCCG-- 30547 ||| || ||||||||||| |||||||||||||||| ||||| |||| | |||||||| Sbjct 20537 GCCCCGGGGCATGCGAGGCAATTCGCTGGTGGATTAGAGACGCTGGCCGCGACTGCCGCC 20478 Query 30548 ----TATCCGCTCAAATAA---CTGTTATGGTCAGGTATCCCGTCGCGACCAGGAGAGTG 30600 || || || || ||| || ||||||||| || || |||||||| |||| Sbjct 20477 TGACTAAAGGCCAGAAGAACGGCTGCTACGGTCAGGTAGAACGGCGAGACCAGGAAAGTG 20418 Query 30601 CGCTGGCGTGCTGGGGAATCGAC 30623 | ||||||||||||| || ||| Sbjct 20417 CTTTGGCGTGCTGGGGGATAGAC 20395 Score = 140 bits (154), Expect = 1e-28 Identities = 202/283 (71%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 31696 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGAGATAAAAA-AGTCAGAGA 31754 ||||| || || |||||||| |||||||||||| |||||| |||||| | | ||| | Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCCACTGAGAAA 18126 Query 31755 GCTGGAGCTGGCAAACGCAACCATTACTGATATGCAGGTGCGCCAGCGTGATGTTGCTGC 31814 || | ||| ||||| ||||| | || |||||| ||||||||||||| ||||| Sbjct 18125 -CTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCTGC 18067 Query 31815 GCTTGATGCTAAATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTGCG 31874 ||| ||||| |||||| | | ||| || ||||||| || | | ||| ||||| Sbjct 18066 GCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTGCA 18007 Query 31875 TGCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGCTCAACGCCACCTGCCCCGGTACCGT 31934 | ||||| ||||| |||||||| |||| ||||||||| | ||| |||| | | Sbjct 18006 TAGCGATGTCATTGCTGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCCGCGAAC-- 17949 Query 31935 GCGTGAAGCCACCGGCACCTCCGGCGTGGGCAATGATGCCAGC 31977 | ||| ||||||||| |||| ||||| ||| | || || Sbjct 17948 ----GGAGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGC 17910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200994005295608