Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_028686.1
Length=166313
Score E
Sequences producing significant alignments: (Bits) Value
seq236 205 1e-47
seq637 168 7e-37
seq974 163 3e-35
seq895 105 7e-18
>seq236
Length=545527
Score = 205 bits (226), Expect = 1e-47
Identities = 149/173 (86%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 48813 TCTGTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGGAGTTGAAGCGT 48872
|| || || ||||| ||||||||||||||||||||||| | ||||| ||||||||||||
Sbjct 30885 TCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTCAGAGAGTTGAAGCGT 30826
Query 48873 ACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCG 48932
||||| || || || || ||||||||||||||||| |||||||| || ||||||||||||
Sbjct 30825 ACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCTGGGTGCTCAACCGCG 30766
Query 48933 TCCAGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTC 48985
|||| ||| ||||| || ||||| ||||| ||||| ||||||||||| |||||
Sbjct 30765 TCCATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGACCACCTTC 30713
>seq637
Length=122170
Score = 168 bits (186), Expect = 7e-37
Identities = 141/173 (82%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 48816 GTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGGAGTTGAAGCGTACC 48875
||||||||||| | ||||||||| |||||||||| ||||||||||| || |||||
Sbjct 107119 GTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGAGTTAAAACGTACT 107178
Query 48876 GCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCGTCC 48935
|||||||| || ||||| ||||||||||| |||||||| || ||||| || | ||| ||
Sbjct 107179 GCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATGTTCCATCGCATCG 107238
Query 48936 AGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCAAT 48988
||||| ||||||| || ||||| ||||||||||||||||| ||||| ||
Sbjct 107239 AGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTGCTGACCACCTTCGAT 107291
>seq974
Length=31311
Score = 163 bits (180), Expect = 3e-35
Identities = 280/404 (69%), Gaps = 2/404 (0%)
Strand=Plus/Plus
Query 128685 TCTACACCTTTGTTGTTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGA 128744
|| ||||| |||||| || || || || ||| |||| ||||||| |||||| || ||
Sbjct 1 TCAACACCACGGTTGTTTTTCAGGACCAGCAGGCTTTCCACTTCCAGGTGCCACATAGGG 60
Query 128745 TAGTACAGTGTCGCCGCGCCACCACGGACTCCGCCTTGGGAGCAGGATTTAACTGCTGTT 128804
||| |||| ||||| || || || || || ||||| || ||||||||||| || || ||
Sbjct 61 TAGAACAGGGTCGCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGATTTTACCGCCGTC 120
Query 128805 TGGAAGTGCTTCCAGAAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAATTTTT 128864
||||||||||| |||| || ||| || || || |||||||| | |||
Sbjct 121 TGGAAGTGCTTATAGAACGGGATACAGCCGGTGTGGAATGCTTCACCGCCGCGAATCGGG 180
Query 128865 GAACCTTCTGCACGAATCATACCTGCATTAATACCAATACCTGCACGCTTACTGATGTAT 128924
|| ||||| || ||| || || || || ||||| ||||||| | ||||
Sbjct 181 CTGCCCAGCGCACGGATGCGACCGGCGTTGATGCCGATACCGGCACGCTGGGAAACGTAT 240
Query 128925 TTTGTAATTGACGCAGCA-GCTTCGTTAATTGAATTAAGACTATCACCGCCTTCAATAAC 128983
|| | || ||| | | | |||| || |||| || || ||||| | || || |
Sbjct 241 TTCACGA-TGGCGCTGGACGTGGCGTTGATGGAATCCAGGCTGTCACCACACTCGATCAG 299
Query 128984 CACGCATGAACTAAACTGACGTGTCGGAGTACGAACACCAGACATAATTGGAGTTGGCAA 129043
||||| || || |||||||| || || || || || |||||||| ||||| || ||||
Sbjct 300 TACGCAGGAGCTGAACTGACGGGTTGGGGTGCGCACGCCAGACATGATTGGCGTAGGCAG 359
Query 129044 TGAAATCTTTTTAGTAGAAACTGCATCATAGAAACGAATAACGT 129087
|||||||| || || || ||||| |||||||| | ||||
Sbjct 360 AGAAATCTTGAACGTCGATACCGCATCGTAGAAACGCTTCACGT 403
>seq895
Length=39754
Score = 105 bits (116), Expect = 7e-18
Identities = 112/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 48841 GCTGCTGTTCCGACGTCAGGGAGTTGAAGCGTACCGCGTAGCCGGAAACACGAATGGTCA 48900
||||||| || |||||||| || || || ||||| ||||| || || || |||||||
Sbjct 11905 GCTGCTGCTCGCGCGTCAGGGCATTAAACCGCACCGCATAGCCCGAGACGCGGATGGTCA 11964
Query 48901 GCTGCGGATATTTTTCCGGATGCTCAACCGCGTCCAGCAGAGTTTCACGACGCAGCACGT 48960
| | ||| || || || |||||| ||| || || || || | || || || |||||
Sbjct 11965 GGTTCGGGTAGTTCTCGGGATGCGCAATGGCATCGAGGAGCATCTCCCGGTTCATCACGT 12024
Query 48961 TAACGTTCAGGTGCTGACCGCCTTCAAT 48988
|||||||||||||||| ||||| |||||
Sbjct 12025 TAACGTTCAGGTGCTGCCCGCCCTCAAT 12052
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 532061668249520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |