Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_028686.1 Length=166313 Score E Sequences producing significant alignments: (Bits) Value seq236 205 1e-47 seq637 168 7e-37 seq974 163 3e-35 seq895 105 7e-18 >seq236 Length=545527 Score = 205 bits (226), Expect = 1e-47 Identities = 149/173 (86%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 48813 TCTGTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGGAGTTGAAGCGT 48872 || || || ||||| ||||||||||||||||||||||| | ||||| |||||||||||| Sbjct 30885 TCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTCAGAGAGTTGAAGCGT 30826 Query 48873 ACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCG 48932 ||||| || || || || ||||||||||||||||| |||||||| || |||||||||||| Sbjct 30825 ACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCTGGGTGCTCAACCGCG 30766 Query 48933 TCCAGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTC 48985 |||| ||| ||||| || ||||| ||||| ||||| ||||||||||| ||||| Sbjct 30765 TCCATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGACCACCTTC 30713 >seq637 Length=122170 Score = 168 bits (186), Expect = 7e-37 Identities = 141/173 (82%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 48816 GTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGGAGTTGAAGCGTACC 48875 ||||||||||| | ||||||||| |||||||||| ||||||||||| || ||||| Sbjct 107119 GTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGAGTTAAAACGTACT 107178 Query 48876 GCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCGTCC 48935 |||||||| || ||||| ||||||||||| |||||||| || ||||| || | ||| || Sbjct 107179 GCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATGTTCCATCGCATCG 107238 Query 48936 AGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCAAT 48988 ||||| ||||||| || ||||| ||||||||||||||||| ||||| || Sbjct 107239 AGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTGCTGACCACCTTCGAT 107291 >seq974 Length=31311 Score = 163 bits (180), Expect = 3e-35 Identities = 280/404 (69%), Gaps = 2/404 (0%) Strand=Plus/Plus Query 128685 TCTACACCTTTGTTGTTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGA 128744 || ||||| |||||| || || || || ||| |||| ||||||| |||||| || || Sbjct 1 TCAACACCACGGTTGTTTTTCAGGACCAGCAGGCTTTCCACTTCCAGGTGCCACATAGGG 60 Query 128745 TAGTACAGTGTCGCCGCGCCACCACGGACTCCGCCTTGGGAGCAGGATTTAACTGCTGTT 128804 ||| |||| ||||| || || || || || ||||| || ||||||||||| || || || Sbjct 61 TAGAACAGGGTCGCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGATTTTACCGCCGTC 120 Query 128805 TGGAAGTGCTTCCAGAAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAATTTTT 128864 ||||||||||| |||| || ||| || || || |||||||| | ||| Sbjct 121 TGGAAGTGCTTATAGAACGGGATACAGCCGGTGTGGAATGCTTCACCGCCGCGAATCGGG 180 Query 128865 GAACCTTCTGCACGAATCATACCTGCATTAATACCAATACCTGCACGCTTACTGATGTAT 128924 || ||||| || ||| || || || || ||||| ||||||| | |||| Sbjct 181 CTGCCCAGCGCACGGATGCGACCGGCGTTGATGCCGATACCGGCACGCTGGGAAACGTAT 240 Query 128925 TTTGTAATTGACGCAGCA-GCTTCGTTAATTGAATTAAGACTATCACCGCCTTCAATAAC 128983 || | || ||| | | | |||| || |||| || || ||||| | || || | Sbjct 241 TTCACGA-TGGCGCTGGACGTGGCGTTGATGGAATCCAGGCTGTCACCACACTCGATCAG 299 Query 128984 CACGCATGAACTAAACTGACGTGTCGGAGTACGAACACCAGACATAATTGGAGTTGGCAA 129043 ||||| || || |||||||| || || || || || |||||||| ||||| || |||| Sbjct 300 TACGCAGGAGCTGAACTGACGGGTTGGGGTGCGCACGCCAGACATGATTGGCGTAGGCAG 359 Query 129044 TGAAATCTTTTTAGTAGAAACTGCATCATAGAAACGAATAACGT 129087 |||||||| || || || ||||| |||||||| | |||| Sbjct 360 AGAAATCTTGAACGTCGATACCGCATCGTAGAAACGCTTCACGT 403 >seq895 Length=39754 Score = 105 bits (116), Expect = 7e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 48841 GCTGCTGTTCCGACGTCAGGGAGTTGAAGCGTACCGCGTAGCCGGAAACACGAATGGTCA 48900 ||||||| || |||||||| || || || ||||| ||||| || || || ||||||| Sbjct 11905 GCTGCTGCTCGCGCGTCAGGGCATTAAACCGCACCGCATAGCCCGAGACGCGGATGGTCA 11964 Query 48901 GCTGCGGATATTTTTCCGGATGCTCAACCGCGTCCAGCAGAGTTTCACGACGCAGCACGT 48960 | | ||| || || || |||||| ||| || || || || | || || || ||||| Sbjct 11965 GGTTCGGGTAGTTCTCGGGATGCGCAATGGCATCGAGGAGCATCTCCCGGTTCATCACGT 12024 Query 48961 TAACGTTCAGGTGCTGACCGCCTTCAAT 48988 |||||||||||||||| ||||| ||||| Sbjct 12025 TAACGTTCAGGTGCTGCCCGCCCTCAAT 12052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532061668249520