Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq997 188 2e-43 >seq997 Length=29618 Score = 188 bits (208), Expect = 2e-43 Identities = 291/408 (71%), Gaps = 8/408 (2%) Strand=Plus/Minus Query 36807 GCATGAATTTGGAAAATGTAGTGAAGTTTCACTTCGCAAAATCTACTCAGATAAACGA-T 36865 |||||||| | |||||| | || | ||||||||| ||||| || ||| | ||| | Sbjct 23438 GCATGAATCTTGAAAATACTCTCAAATATCACTTCGCCAAATCGACAATGATTAGCGACT 23379 Query 36866 ATCCCTCGCGCAACAGCTTCAGAAGCGTTAACTGGCACTGATGTTATGGCAGCTATGGGT 36925 |||| || |||| || ||||| || ||||| || || ||| | ||||| |||||||| Sbjct 23378 CTCCC-CGGACAACGGCATCAGATGCATTAACCGGAACGGATATCATGGCTGCTATGGGC 23320 Query 36926 ATGACTCAAAGTCGCGCATCGTTAGGTTACAGCGCGTTTCTTGGGAAGATGGAAATCAGC 36985 ||||| || || || | | ||||||||||| ||||| |||||||||| |||||| Sbjct 23319 ATGACGCAGGAACGGGCCGCCATGGGTTACAGCGCTTTTCTCGGGAAGATGGGGATCAGC 23260 Query 36986 AGCAATGACCGTGAGAAAGCTATTGAACTGCTGACCCAATATGCACTTGAGCACTGCGAT 37045 | ||||||||| |||| || ||||| ||| | | || ||||| || | |||||| Sbjct 23259 AACAATGACCGGGAGAGGGCGATTGAGTTGCAGGCTCAGTATGCGCTGACTAAGTGCGAT 23200 Query 37046 AAGGTTTCCGCCTTACGTAAGCTCGAAAACGATATTAAACCAAAGGTAATGCAAGTGCTC 37105 |||| | || ||||| ||||| | || ||||||||| ||||||||| | | Sbjct 23199 CGGGTTGCGGCATTACGGAAGCTTAATGCAGAGATTAAACCACTGGTAATGCATCAGTTG 23140 Query 37106 GCAACATTCGCATTTGCTGATTACTCACGTAGCGCTGCCAGTACGCGAACC--TGTGACT 37163 || | ||||| || | || || || || ||||| ||||| || ||| | ||||| | Sbjct 23139 GCCAGCTTCGCTTTCGAAGACTATTCCCGCAGCGCCGCCAG--CGTGAAACAGTGTGATT 23082 Query 37164 GCTG-TGGTGGCAAGAAGTTTATCGATGCTGAAGTCATGACGATGAAA 37210 |||| | | | |||| | || || || ||||| || | ||||||||| Sbjct 23081 GCTGCTCGGGTCAAGGA-TTCATTGAGGCTGATGTTTTCACGATGAAA 23035 Score = 167 bits (184), Expect = 6e-37 Identities = 177/232 (76%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 38893 ATGAGTCGGTTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGTCTGTCA 38952 ||||| | ||||||||||| |||| |||| | ||||||||| | | |||| | || | Sbjct 18254 ATGAGCTGATTAACCGCGATCATCTGCGCTGTCGTTATCTGCCTGCTGGTCTTTATGGCT 18195 Query 38953 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGAGCAGCGCGATAAAAAA 39012 ||||| |||| || || || || |||||||| ||||||||||||||||||||| ||| Sbjct 18194 TGGGCGATTAACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGAT---AAA 18138 Query 39013 GTCAGTG---AACTGAAGCAGGCGACCGCCACCATTACTGACATGCAGCAGCGCCAGCGT 39069 | || || |||| | ||||| | ||||||||| | ||||||||| ||||||||| Sbjct 18137 GCCACTGAGAAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGT 18078 Query 39070 GATGCTGATGCACTTGATGCTAAATACACGAAGGAGTTAGCTGATGCGAAAG 39121 ||||| | ||| || ||||| |||||||| || ||||||||||||| Sbjct 18077 GATGCCGCTGCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAG 18026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132157184496400