Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_028699.1 Length=40740 Score E Sequences producing significant alignments: (Bits) Value seq997 663 0.0 >seq997 Length=29618 Score = 663 bits (734), Expect = 0.0 Identities = 1012/1427 (71%), Gaps = 41/1427 (3%) Strand=Plus/Minus Query 35572 GTATACTGTATAAAAATACAGTG-TATGCAATGGGGGCTACTA-TGAAAATTGAATTAAC 35629 |||||||||||| |||||||| | || | || || | || ||||||| || ||||| Sbjct 25261 GTATACTGTATATGCATACAGTGGTTTGTCACGGAGGGAAATAATGAAAATCGAGTTAAC 25202 Query 35630 CATTGATCGCACAAAGAAACTTCCCGAAGGCGCGGAAGCGGCACTTGAGAAAGAACTGCT 35689 ||||||||||| ||||||||||| || || || | | || || ||| ||||||||| Sbjct 25201 CATTGATCGCATGAAGAAACTTCCTGATGGAGCTATACCTGCGCTCGAGTCAGAACTGCT 25142 Query 35690 TAAGAGGCTCAATGATCAGTATGAAGGTTGC-AGCTTGGTTATTCGTCGCGCCGGGTCTG 35748 || ||||||| |||| || |||| ||||| ||| || ||| | || Sbjct 25141 CAAAAGGCTCAGCACACAGTTCGACAATTGCCAGCTTACA-ATTAAGCGTGCCAGTAATG 25083 Query 35749 ACGGCCTAAGCGTTTATGGCGCTGAAAAGGACGACAAAAAGAAAGTTGAAAAAATCCTCC 35808 |||| | | |||| || | || ||| ||||| || ||| | ||| | | Sbjct 25082 ACGGTTTGACTGTTTTCGGTGGCGACAAG--------AAAGAG-GTCGAACATATCGTGC 25032 Query 35809 AGGAGACCAGGGAGAGCGCTGACGACTGGTTTTATTAACATTGCGCTTAATG---CTGGC 35865 ||||||| |||| ||||| ||||| |||||||||||| | ||| | ||| |||| Sbjct 25031 AGGAGACTTGGGAAAGCGCGGACGAGTGGTTTTATTAA--TCGCG-TGAATTTCACTGGA 24975 Query 35866 GCGCATTTTTCAGAATACCGCAATTTGCGTATCCCTTTGATGCTGCTGCCGACAATTTTT 35925 || ||| ||| || ||| ||||||| |||| |||| | |||| | | || Sbjct 24974 GCAG-TTTCAAAGAGTATCGCTGTTTGCGTTCCCCTG----GCTGTTCCCGATTACTGTT 24920 Query 35926 AACCGCGTCTGTACATCGC-CTGAAGGGAGAACAAAAATTGAGTAATTCAG----CTTTG 35980 |||||||| || |||| ||| || ||| | || ||| | ||| |||| Sbjct 24919 TACCGCGTCAATAAGTCGCTCTGGGGG------AAATAGTGTGTAGTGCAGATGCCTTT- 24867 Query 35981 CAAAAGTCAGAAGATAGCTGGTATGACATTGTAAGAAGATCTGATGGCTGCGTGGTGTTT 36040 || |||| ||| ||||| ||| | || ||||| | ||| || | | | Sbjct 24866 ---AATGCAGATGATCAATGGTACGACGTGGTCAGAAGGGCCGATAAAGCAGTTATCTAT 24810 Query 36041 AGCTTTCCATCATCAGGCAGGCATCTTATCTATCGTGTAAATGGCATGGTATCTATGCGT 36100 ||||| || | ||| || |||| | ||||| |||||||| || || || | || Sbjct 24809 AGCTTCCCGGCGGAAGGGAGATATCTGGTTTATCGAGTAAATGGAATAGTTTCATTACGA 24750 Query 36101 CCTTTGCTGGATGATGAAGAAGTTTTTACTCCCAACGGTTTTATGCATTTTATTCGCCGT 36160 || || || || || |||||| | || ||| ||| || |||||||| ||| || Sbjct 24749 CCGTTACTCGAAGAGGAAGAAATCTTCACTTTCAATGGGTTTATGCAATTTGCAAAACGA 24690 Query 36161 CTCGGCTACCGGGTAACACCACCTTCTGATAATATGAAATCAACGGCCTGAACAACCGTT 36220 || || ||||| || |||||||| ||||||| ||| ||| ||||||||||||| | Sbjct 24689 CTGGGGTACCGAGTTACACCACCGTCTGATATTATTCTTTCATAGGCCTGAACAACCTAT 24630 Query 36221 AACCTTCTGCGCCACGGAGAATACCATGGCGCACGAATTACAACTCATCAAGCAGTCATC 36280 | ||| ||||||||||||| |||||||||| ||||||||||| || || || || Sbjct 24629 A-CCTGATGCGCCACGGAGATAACCATGGCGCTAGAATTACAACTTATAAAACACCACTC 24571 Query 36281 TGGAATTCTGATCCCCGCTACGCCGGAGACCAGCGAAATTCTGCAATCAAAAATTAAACT 36340 ||||| |||||||| |||||||| ||||||||||| || |||||||| |||| || Sbjct 24570 AGGAATACTGATCCCGGCTACGCCCGAGACCAGCGATATCCTGCAATCTAAAACCCGGCT 24511 Query 36341 CGGTGCCGTGCTGGTGGCTGAGTTCCGTCAGGTTAGGAATCCTGCATTCCATCGCCGCTT 36400 ||| | || || || || |||||| | | ||| | || || |||||||| || ||||| Sbjct 24510 CGGCGATGTTCTTGTTGCCGAGTTCAGGCGGGTACGAAACCCGGCATTCCACCGGCGCTT 24451 Query 36401 TTTCGCGTTGCTTAATCTTGGGTTTGAATACTGGGAACCCACCGGCGGCGCCATTTCTGC 36460 ||| ||| | || ||||| || ||||||||||||||||| |||||||| || |||||| Sbjct 24450 TTTTGCGCTTCTCAATCTCGGTTTTGAATACTGGGAACCAACCGGCGGGGCTATTTCTAG 24391 Query 36461 CAATGAGCGCAAACTGGTAAACGGTTATGCAAAGTTTCTCGCTGCATATGGCGGGAATGA 36520 ||| ||||| || ||| | | ||| || || ||||| || ||| ||||||||||||| || Sbjct 24390 CAACGAGCGGAAGCTGATTACCGGCTACGCCAAGTTCCTGGCTTCATATGGCGGGAACGA 24331 Query 36521 GGGCGCATTACTGGATGCGGCTGAACAGTATCTGGAACAGATTGCAAACCGCCGGCTAAC 36580 ||| || | | ||||| || |||||||| ||||||||| |||| | || || | || Sbjct 24330 GGGGGCTCTGATCGATGCTGCCGAACAGTACCTGGAACAGGTTGCTTATCGGCGTGTCAC 24271 Query 36581 AAACGGGATTAGCCTGTGTAAATCATTCGATGCCTACCGCGCATGGGTGACGGTTGAGGC 36640 || || ||||||||||| ||||| |||||||| |||||| ||||||||| |||||||| Sbjct 24270 GAATGGCATTAGCCTGTGCAAATCCTTCGATGCTTACCGCTCATGGGTGATCGTTGAGGC 24211 Query 36641 TGGTCACTATGACGCCATCCAGTTACCGGACGGCACCCTTCGCAAACATCCCCGCAGCAT 36700 || |||| ||| ||||| ||| |||| ||||| || || || ||||| || ||||| Sbjct 24210 AGGGCACTTTGATGCCATTCAGCTACCTGACGGAACACTCAAAAAGCATCCACGTAGCAT 24151 Query 36701 CGCTTTTTCCAGCATGGATGAGGTCGAATTTCAGCAGTTGTATAAATCCGCGCTTGATGT 36760 | | || ||| |||||| ||| |||| || |||||| | |||||| | ||||| ||||| Sbjct 24150 CTCATTCGCCAACATGGACGAGCTCGAGTTCCAGCAGCTCTATAAAGCTGCGCTCGATGT 24091 Query 36761 GCTCTGGCGGTGGATTTTATCACGTACATTTCGTACTCAGCGCGAGGCGGAGAACGCCGC 36820 ||||| || ||| | | || ||| |||| |||| || ||||| || || | ||| Sbjct 24090 TCTCTGACGCTGGGTCCTGTCGCGTTCATTCCGTAGTCGTGATGAGGCAGAAAATGTCGC 24031 Query 36821 CGCCCAGCTAATGAGCTTTGCGGGGTGATGGCGATGAAATACTCCTGGTTCCATCATCAC 36880 ||| |||||| | |||||||||||||||| ||||| | |||||||||| || | Sbjct 24030 CGCGCAGCTACTTGACTTTGCGGGGTGATGG-AATGAAGAAGACCTGGTTCCACCACACC 23972 Query 36881 GACTGCACAACCGAGCAGGCCGACACGCTGATATCGGATTATCAGAAGCGGGGCGTAAGG 36940 || |||| ||||| ||||||||| ||| | | ||| | ||| ||||| || Sbjct 23971 GATTGCAGCACCGAACAGGCCGACGAACTGGTTAAGCGTTACAAAGCGCGCGGCGTTCGG 23912 Query 36941 ACAGAAAAGAGCCTGAACCCTGACTTCATTACCTGGACTGTCAGCGC 36987 || ||||| ||||| || | | | |||||||||||||| || Sbjct 23911 GTTGAGCGCAGCCTTAACCCGGATTACGTGACCTGGACTGTCAGTGC 23865 Score = 82.4 bits (90), Expect = 2e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 39837 AATCACTACCGCAATAACGCTATCACTTACAAGGACCAGCGCGACACCGCTACCCACAAG 39896 || ||||| ||| | ||||| ||||| ||||| || |||||||| | || || | || Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCCACTGAGAAA 18126 Query 39897 CTGACACTGGCGAACGCGACAATTACCGACATGACGAAGCGCCAGCGTGACATTGCCGCC 39956 || | | ||| ||||| || || | |||||| || ||||||||||| || || Sbjct 18125 CTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCTGCG 18066 Query 39957 CTCGATGCAAAATACACGAAGGAACTAGCTGATGC 39991 || ||||| |||||||| |||| |||||||| Sbjct 18065 CTGGATGCCAAATACACTGGAGAACCGGCTGATGC 18031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130243625263256