Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_028701.2 Length=33509 Score E Sequences producing significant alignments: (Bits) Value seq1001 313 5e-81 >seq1001 Length=29257 Score = 313 bits (346), Expect = 5e-81 Identities = 863/1299 (66%), Gaps = 28/1299 (2%) Strand=Plus/Plus Query 10442 CGTGGTGGTAGAACCGCTGGACTTCGAAACGCTTTTC-GCGCAGCGCAAGGCCGCATTTA 10500 ||| |||| ||||| |||||| ||||| | | ||| | || ||||| || | Sbjct 2753 CGTCGTGGAAGAAC---TGGACTATGAAACCATCCTGAGCGAA-CGAAAGGCGACACTCG 2808 Query 10501 TTGCGATGTACCCGGAAGACGAGCAGGAAGAGATCGCCCGCACGCTTGAGCTTGAATCGG 10560 | || | |||||||||||| ||||||| | ||||| |||||||| |||||| || | Sbjct 2809 TCTCGCTATACCCGGAAGACCAGCAGGACGCAATCGCGCGCACGCTGTCGCTTGAGTCCG 2868 Query 10561 AGCCGATCACCATGCTGCTGGAAGAGAATTGCTATCGCGAATTGCTGTTGCGCCAGCGGG 10620 ||||| | | ||||||| | || || ||| || ||| | | | ||| ||||| | Sbjct 2869 AGCCGCTGGTGAAGCTGCTGCAGGAAAACGCCTACCGGGAAGTTATCTGGCGACAGCGCG 2928 Query 10621 TGAATGAAGCGGCCCGCGCGGTGATGCTGGCTTATTCCACGGATAGCGATCTGGATAATC 10680 | || || || || || ||||| |||||||| || | | | ||||| || || | Sbjct 2929 TCAACGAGGCCGCGCGTGCGGTCATGCTGGCCTACGCTGCAGGAAGCGACCTTGACCAGA 2988 Query 10681 T-GGCGGTCAATTTCAACGTTGAACGTCTG---ACCATTCAGGAAGAAGACGACAGCGTT 10736 | ||||| |||| ||||||||| || || | || | | ||| ||| || |||| Sbjct 2989 TAGGCGGA-AATTACAACGTTGAGCGCCTTGTTATCACCCCTGCAGACGAC-ACGACGTT 3046 Query 10737 ACTCCGCCAATTGAAGCCGTGGTGGAGTCAGACGCGGATTTACGCACGCGTACCCAGCAG 10796 || |||| | |||||| ||||||| ||| | || | || ||| | |||||| Sbjct 3047 AC--CGCCGACGCCTGCCGTGATGGAGTCGGACACCGACTACCGTCTGCGCATTCAGCAG 3104 Query 10797 GCTTTTGAAGGTCTGAGCGTGGCCGGGCCAACGGCGGCGTATGAGTTTTGGGGGCGTTCG 10856 || ||||| || ||||| || || | || | | ||| ||||| || || Sbjct 3105 GCCTTTGAGGGGCTGAGTACCGCAGGCTCTACCGGCTCCTATCAGTTTCACGGTCGCAGC 3164 Query 10857 GCTGACGGGCGCGTAGCTGATATTTCGGCGGTCAGTCCTACGCCTGCCTGCGTCACCATT 10916 ||||||||||| || || |||||||||| ||||||| ||||| ||||| ||| || Sbjct 3165 GCTGACGGGCGGGTCGCCGATATTTCGGTCATCAGTCCCGAACCTGCGTGCGTGACCGTT 3224 Query 10917 TCGGTGCTGTCGCGCGAGGGTGACGGAACGGCCAGCGATGATCTGCTTTCCGTTGT-CGC 10975 ||||||| || ||||| | |||| ||| || || ||||| | | || ||| Sbjct 3225 ACGGTGCTTTCCCGCGAAAATAACGGCGTGGCGTCTGACGAGCTGCTCAACATCGTGCGC 3284 Query 10976 TGCCGCCCTGAACGATGAAGAGGTGCGCCCGGTGGCCGACAGGGTAACGGTGCAGTCTGC 11035 | || |||||||||||||| || | ||||| || ||| | || || ||||||| || Sbjct 3285 AAC-GCGCTGAACGATGAAGACGTCAGGCCGGTCGCTGACCGCGTGACCCTGCAGTCGGC 3343 Query 11036 GGACATTGTGCCGTACCAGATTGATGCAACGCTTTACATCTATCCGGGGCCGGAAGCTGA 11095 | ||||| | || | || || |||||||| | || || || || ||| || Sbjct 3344 GAACATTATCGACTATAAAATCACCGCGTCGCTTTACCTTTACCCCGGTCCCGAAAGCGA 3403 Query 11096 ACCCGTCCGGCAG-GCATCGGA-GCAGCAGTTACAGGCGTATATTACCGCGCAGAATCGC 11153 || || | ||| || || | ||| || | ||||||||||| ||||||||| | || Sbjct 3404 GCCTGTGCT-CAGTGCTGCGAAAGCAA-AGCTGCAGGCGTATATCACCGCGCAGCACCGG 3461 Query 11154 TTAGGGCGCGATATCCGTATTTCTGCTATCTACGCCGCCCTGCACGTCGAAGGCGTCCAG 11213 | |||||||||||||| | || || || || ||||| || || || || ||||| ||| Sbjct 3462 CTCGGGCGCGATATCCGCAAATCGGCCATTTATGCCGCGCTCCATGTTGAGGGCGTGCAG 3521 Query 11214 CGCGTTGAACTGGCGCAGCCTGTTGCGGATATCGTGCTGAGTGACTACCAGGCATCGCAC 11273 ||||| || ||||| | || || || || ||||| || |||| || || || Sbjct 3522 CGCGTCGAGCTGGCCGAACCGGTGGCCGACATCGTTCTCGATGACACACAAGCGTCATGG 3581 Query 11274 TGCACCGAATACACCATAACGGTGGGTGGTTACGATGAGTAAT---GACTTGTTACCACC 11330 |||| ||| ||| || | || | || || ||||||| | || | || | || Sbjct 3582 TGCAGCGACTACGCCGTCACCATAGGGGGCAACGATGAATGATACCCGCCTGCTGCCGGT 3641 Query 11331 CAG--CGCCAGCCGAATGGAGCGCGTCGCCGCGCGCGTCTGCGCCTCGTTGGGAGAAGTG 11388 | || || ||| | ||| | || ||||||| |||||| | | | | | Sbjct 3642 GGGCTCGTCA-CCG-CTTGAGGTGGCGGCGGCGCGCGCCTGCGCTGAGATTGAAAATACC 3699 Query 11389 CCCGTGCCATTGCGCCAGTTGTGGA-ACCCGTGGACGTGTCGGGCTGATCTGCTGCCCTA 11447 ||||| || |||| | | |||| || | ||| || | ||| |||||||||| | Sbjct 3700 CCCGTTCCGCTGCGTCGTCTCTGGAGTCCTGACGAC-TGCCCGGCAAATCTGCTGCCGTG 3758 Query 11448 TCTGGCGTGGGCCTTCTCCGTTGATCGCTGGGATGAGGCTTGGCCGATCAGCACGAAACG 11507 ||||||||||| || |||||||| |||||||| ||| |||||| ||| || || Sbjct 3759 GCTGGCGTGGGCGTTTTCCGTTGACCGCTGGGACGAGAACTGGCCGGAGGCCACAAAGCG 3818 Query 11508 AAAGGCGGTGGCCGATGCGTTCTATCTGCATAAGCACAAAGGTACTACGGGCGCCATGCG 11567 | | | | || |||| | | | ||| ||||||||| || | || || |||| Sbjct 3819 GGATGTGATCCGCGCGGCGTGGTTTATCCATGCGCACAAAGGAACGATTGGGGCAGTGCG 3878 Query 11568 CCGGGTTGTGGAACCGTTCGGCTTCTTCATCCGGGTTAACGAGTGGTGGAACATTGATAC 11627 ||| || ||||| || |||||| | | || || ||||||||| | | | Sbjct 3879 CCGCGTGGTGGAGCCCCTCGGCTACCTGATTAACGTGTCGGAGTGGTGGGAAACCAACGA 3938 Query 11628 CGCACCGGGCACCTTCACGCTGGATATCGGTGTGGAAGACCAGGGCATCAGTGAAGAAAC 11687 | |||| ||||| || || |||||||||||| ||| ||||||| || |||| Sbjct 3939 CCCACCCGGCACGTTTCGCCTCGATATCGGTGTGTTAGAGACCGGCATCACCGAGGAAAT 3998 Query 11688 CTATCAGGAGCTTGAACGCCTGATCGCCGATGTGAAGCC 11726 ||| | ||| | || || || || ||||||| ||||| Sbjct 3999 GTATTACGAGATGGAGCGGCTCATTGCCGATGCAAAGCC 4037 Score = 125 bits (138), Expect = 2e-24 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 9779 AAAACGGCAAGCGTCACCGCGTCGGAATTCATTACCGCCACCGTGCCGGTGGTAACGGTC 9838 ||||| || |||||||||||| || | |||||| ||| ||||||||||||| ||| Sbjct 2067 AAAACCGCTGACGTCACCGCGTCTGAGTCCATTACGGCCCCCGTGCCGGTGGTGCTGGTG 2126 Query 9839 AAAGCAGATACGCGCATTACCATGGACACGCCGGAAGTGGTCTGCACCAACAAGCTGATC 9898 ||||| | || || || | || |||||||| ||||| |||||||||||||||| Sbjct 2127 AAAGCGTCAAGCCGAATCACGCTCGATACGCCGGAGGTGGTGTGCACCAACAAGCTGACG 2186 Query 9899 ACCGCCACGCTGGAAGTGCAAAACGGCGGGGAAATGAAGGGCAACAT 9945 |||| |||||| |||||||| || |||||| |||| || ||||| Sbjct 2187 ACCGGCACGCTCGAAGTGCAGAAAGGCGGGACGATGAGCGGGAACAT 2233 Score = 86.0 bits (94), Expect = 1e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15218 ACCCGTTTCAGGTTGAGCGTAAAGTCAATTTTCTTTGCCTTCCCGTCATTAAAAAACTCC 15277 |||||||| ||| || |||| || ||||| | || |||||| | || | ||| Sbjct 11788 ACCCGTTTAAGGGACAGGCTAAACTCGATTTTTCTGGCAGCACCGTCACTGAATAGCTCA 11729 Query 15278 GTCCGGTTTTGCGTGATCTGTTCAATTACATACATGCCGTAGATCCTGCCCGTGCCTTCA 15337 || || | ||||| | | || || ||||||||||||| |||| ||||||| || ||| Sbjct 11728 GTGTGGGTGTGCGTCACTTTGTCGATGACATACATGCCGTGGATCATGCCCGTCCCGTCA 11669 Query 15338 ATCAGGGGCCACGGGCGCCC 15357 ||||| ||||||| |||||| Sbjct 11668 ATCAGCGGCCACGCGCGCCC 11649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107104918214988