Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_028760.1 Length=49037 Score E Sequences producing significant alignments: (Bits) Value seq960 86.0 2e-12 seq997 82.4 2e-11 >seq960 Length=33163 Score = 86.0 bits (94), Expect = 2e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 25887 GATTATCCAGGTTCCGAGCAACTACGACCCTGTTAACAGGACATATGCCGGAACGTGGGA 25946 ||| |||| || || ||||||||||| || | | | |||| || ||| |||||| Sbjct 13036 GATCATCCGCGTGCCAAGCAACTACGATCCGGCCACCCGGACCTACAGCGGCGTGTGGGA 13095 Query 25947 CGGAACTTTCAAATGGGCGTGGAGCAACAACCCGGCCTGGGTTCTTTACGACCTGATCAT 26006 ||| || ||||| | ||| |||| | |||||||||||||| | ||||||||| | | Sbjct 13096 CGGCACCTTCAAGTCGGCCTGGACCGACAACCCGGCCTGGATCTACTACGACCTGCTGCT 13155 Query 26007 GAATCAGCGTTATGG 26021 | | ||||||||||| Sbjct 13156 GCACCAGCGTTATGG 13170 >seq997 Length=29618 Score = 82.4 bits (90), Expect = 2e-11 Identities = 75/93 (81%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 21466 TGCAGCAGCACAAAGGGCTTGACGACAAAATCAGCCAGCAGCGCAAAGACTACTTT--AC 21523 |||| ||||| |||||||| |||||| |||||||| |||||||||||| |||| || Sbjct 3383 TGCAACAGCATAAAGGGCTGAACGACACTATCAGCCAACAGCGCAAAGAC--CTTTGGAC 3326 Query 21524 CACCGTCGCAAAATTCCAGGTGCTGGAAGAAGC 21556 || | || ||||| |||||||||||||| || Sbjct 3325 TACGGAAGCGAAATTTCAGGTGCTGGAAGAGGC 3293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156793459640172