Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq974 168 8e-37 seq637 140 4e-28 seq236 118 1e-21 >seq974 Length=31311 Score = 168 bits (186), Expect = 8e-37 Identities = 252/358 (70%), Gaps = 0/358 (0%) Strand=Plus/Minus Query 18308 TGCCAACCCCAATTATGGCAGGCGTTCGCACCCCAACCCGCCAGTTCTCAAGCTGTGTTA 18367 |||| || ||||| ||| | ||||| |||||||||||||| |||||| ||| || Sbjct 358 TGCCTACGCCAATCATGTCTGGCGTGCGCACCCCAACCCGTCAGTTCAGCTCCTGCGTAC 299 Query 18368 AGATTGAAGTCGGTGACAGCCTCGAATCAATTAACGAATCAGCCGCCGCAGTCGTAAATT 18427 ||| || ||||||||||| || || || |||| | || ||| |||| || | Sbjct 298 TGATCGAGTGTGGTGACAGCCTGGATTCCATCAACGCCACGTCCAGCGCCATCGTGAAAT 239 Query 18428 ATATTAGTAAACGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGTGCGGAAGGAAGTC 18487 | || | || || |||||||| || ||||| ||||| || |||||| || || | Sbjct 238 ACGTTTCCCAGCGTGCCGGTATCGGCATCAACGCCGGTCGCATCCGTGCGCTGGGCAGCC 179 Query 18488 AAGTTCGCTCTGGTGAAGTCAAACACACTGGTGTTATTCCATTCTGGAAACATTTCCAGA 18547 ||||| ||||||| ||||| || ||| || |||| || || ||||||| Sbjct 178 CGATTCGCGGCGGTGAAGCATTCCACACCGGCTGTATCCCGTTCTATAAGCACTTCCAGA 119 Query 18548 CTGCTGTTAAATCGTGTTCACAAGGCGGTGTTCGTGGTGGTGCGGCAACTCTGTATTATC 18607 | || || ||||| || || || ||||| || || || ||||| || || |||| || | Sbjct 118 CGGCGGTAAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCTACC 59 Query 18608 CTATGTGGCATCTTGAATTCGAAAAGCTGATTGTTCTGAAAAATAACAAAGGTGTTGA 18665 |||||||||| || ||| | |||| ||| | || |||||||| ||| |||||||| Sbjct 58 CTATGTGGCACCTGGAAGTGGAAAGCCTGCTGGTCCTGAAAAACAACCGTGGTGTTGA 1 >seq637 Length=122170 Score = 140 bits (154), Expect = 4e-28 Identities = 143/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 125482 CATTGAAGGCGGTCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACGCTTCAAGATGC 125541 ||| ||||| |||||||| || || || || || |||| ||||||| ||| | ||||| Sbjct 107292 CATCGAAGGTGGTCAGCACCTGAACGTGAACGTAATGAACCGTGAAATGCTGCTCGATGC 107233 Query 125542 AGTAAAACATCCTGAAAAATATCCTCAACTGACCATTCGTGTTTCTGGTTATGCAGTTCG 125601 | |||||||||| ||||||||||| |||||||| ||||| ||||| || ||||| || Sbjct 107232 GATGGAACATCCTGAGAAATATCCTCAGCTGACCATCCGTGTATCTGGCTACGCAGTACG 107173 Query 125602 TTTTAATGCATTGACTCGCGAACAGCAGTTGGACGTTATCAATCGCACGTTTACGGAAGC 125661 |||||| | ||||| ||||||||| ||||||||||| || || || || | | Sbjct 107172 TTTTAACTCCCTGACTAAAGAACAGCAGCAGGACGTTATCACCCGTACTTTCACTCAGTC 107113 Query 125662 TATGTAA 125668 |||||| Sbjct 107112 CATGTAA 107106 >seq236 Length=545527 Score = 118 bits (130), Expect = 1e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 125470 GCCGGAAGTTCGCATTGAAGGCGGTCAGCATCTTAATGTCAATGTTCTGAATCGTGAAAC 125529 ||| ||||| ||| | ||||| |||||||| ||||| || || || ||| || ||||| Sbjct 30697 GCCAGAAGTGCGCGTGGAAGGTGGTCAGCACCTTAACGTAAACGTACTGCGCCGCGAAAC 30756 Query 125530 GCTTCAAGATGCAGTAAAACATCCTGAAAAATATCCTCAACTGACCATTCGTGTTTCTGG 125589 ||| || || || | || || |||||||| || || ||||||||||| || ||||| Sbjct 30757 GCTGATGGACGCGGTTGAGCACCCAGAAAAATACCCGCAGCTGACCATTCGCGTGTCTGG 30816 Query 125590 TTATGCAGTTCGTTTTAATGCATTGACTCGCGAACAGCAGTTGGACGTTATCAATCGCAC 125649 |||||| || || || || | |||| | ||||||||| ||||||||| || || Sbjct 30817 TTATGCGGTACGCTTCAACTCTCTGACCCCAGAACAGCAGCGCGACGTTATCGCGCGTAC 30876 Query 125650 GTTTACGGAA 125659 ||||| ||| Sbjct 30877 CTTTACTGAA 30886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582722932145200