Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_028774.1 Length=48754 Score E Sequences producing significant alignments: (Bits) Value seq1547 93.3 1e-14 >seq1547 Length=4346 Score = 93.3 bits (102), Expect = 1e-14 Identities = 139/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 19701 AATGACCAGGTGTTCATGAATAACGCGCTTATTCAGGACGGCTCAATCACCAATGCGAAG 19760 |||| ||||| || |||| ||| |||||||||| ||| | ||||||||||| || Sbjct 1873 AATGGTCAGGTCTTTATGAGCTCCGCATTTATTCAGGATGGCACGATCACCAATGCCAAA 1814 Query 19761 ATCGGTAACGTCATTCAGTCCAACAACT---TTCAGGAGAATGTTGCAGGATGGAGGCTT 19817 ||||| || |||| |||||||| |||| || | | ||| ||||||||||| Sbjct 1813 ATCGGCGACTTCATCCAGTCCAATAACTACGTTGCTGGGTCTGT---CGGATGGAGGCTG 1757 Query 19818 GATAAAAACGGCGTATTTGTCAACTATGGTTCAACATCTGGCGAAGGTTCCATCAAGCAA 19877 |||||| || ||| | ||||| ||||| ||| ||| || || |||| || || Sbjct 1756 GATAAATCAGGAACATTCGAGAACTACGGTTCGACAGTTGGAGAGGGAGCCATGAAACAG 1697 Query 19878 ACTAACCAGAACATCA 19893 || ||||||| |||| Sbjct 1696 ACAAACCAGACAATCA 1681 Score = 80.6 bits (88), Expect = 8e-11 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 20588 GCGGAGGTTTATTTTTTCTCTGTGTTCCCACAGCCAAATCCTGGTTATGGGCTTGCAATT 20647 ||| | ||||||||||||||| | ||||||||| |||| || | || |||||||| | Sbjct 1001 GCGTACGTTTATTTTTTCTCTATTTTCCCACAGACAAAGCCAGACTACGGGCTTGCCGTC 942 Query 20648 TGGGATGAAAACGGCACGCTGATTTTGACCAATGAAACCAGAACACT 20694 ||||||| || ||||| |||||||| || ||||| | ||||| Sbjct 941 TGGGATGCGTCAGGGACGCTTATTTTGACAAACGAAACGCGCACACT 895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155887878932848