Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_028774.1
Length=48754
Score E
Sequences producing significant alignments: (Bits) Value
seq1547 93.3 1e-14
>seq1547
Length=4346
Score = 93.3 bits (102), Expect = 1e-14
Identities = 139/196 (71%), Gaps = 6/196 (3%)
Strand=Plus/Minus
Query 19701 AATGACCAGGTGTTCATGAATAACGCGCTTATTCAGGACGGCTCAATCACCAATGCGAAG 19760
|||| ||||| || |||| ||| |||||||||| ||| | ||||||||||| ||
Sbjct 1873 AATGGTCAGGTCTTTATGAGCTCCGCATTTATTCAGGATGGCACGATCACCAATGCCAAA 1814
Query 19761 ATCGGTAACGTCATTCAGTCCAACAACT---TTCAGGAGAATGTTGCAGGATGGAGGCTT 19817
||||| || |||| |||||||| |||| || | | ||| |||||||||||
Sbjct 1813 ATCGGCGACTTCATCCAGTCCAATAACTACGTTGCTGGGTCTGT---CGGATGGAGGCTG 1757
Query 19818 GATAAAAACGGCGTATTTGTCAACTATGGTTCAACATCTGGCGAAGGTTCCATCAAGCAA 19877
|||||| || ||| | ||||| ||||| ||| ||| || || |||| || ||
Sbjct 1756 GATAAATCAGGAACATTCGAGAACTACGGTTCGACAGTTGGAGAGGGAGCCATGAAACAG 1697
Query 19878 ACTAACCAGAACATCA 19893
|| ||||||| ||||
Sbjct 1696 ACAAACCAGACAATCA 1681
Score = 80.6 bits (88), Expect = 8e-11
Identities = 82/107 (77%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 20588 GCGGAGGTTTATTTTTTCTCTGTGTTCCCACAGCCAAATCCTGGTTATGGGCTTGCAATT 20647
||| | ||||||||||||||| | ||||||||| |||| || | || |||||||| |
Sbjct 1001 GCGTACGTTTATTTTTTCTCTATTTTCCCACAGACAAAGCCAGACTACGGGCTTGCCGTC 942
Query 20648 TGGGATGAAAACGGCACGCTGATTTTGACCAATGAAACCAGAACACT 20694
||||||| || ||||| |||||||| || ||||| | |||||
Sbjct 941 TGGGATGCGTCAGGGACGCTTATTTTGACAAACGAAACGCGCACACT 895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 155887878932848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |