Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_028780.1
Length=167124
Score E
Sequences producing significant alignments: (Bits) Value
seq236 187 3e-42
seq637 154 2e-32
seq895 84.2 2e-11
>seq236
Length=545527
Score = 187 bits (206), Expect = 3e-42
Identities = 151/183 (83%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 101919 GAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCAGTT 101978
||||||||||| ||||| ||||| ||||| |||| || ||||| ||| || || |||
Sbjct 30713 GAAGGTGGTCAGCACCTTAACGTAAACGTACTGCGCCGCGAAACGCTGATGGACGCGGTT 30772
Query 101979 AAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTT 102038
|||| || |||||||| |||||||||||||| || || || |||||||| || |||||
Sbjct 30773 GAGCACCCAGAAAAATACCCGCAGCTGACCATTCGCGTGTCTGGTTATGCGGTACGCTTC 30832
Query 102039 AACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCACCGAGAGTTTG 102098
||||||||||| || ||||||||||||||||||||||| |||||||| || || || ||
Sbjct 30833 AACTCTCTGACCCCAGAACAGCAGCGCGACGTTATCGCGCGTACCTTTACTGAAAGCCTG 30892
Query 102099 TAA 102101
|||
Sbjct 30893 TAA 30895
>seq637
Length=122170
Score = 154 bits (170), Expect = 2e-32
Identities = 138/173 (80%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 101916 ATTGAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCA 101975
|| ||||||||||| ||||||||||| ||||| || ||||||| ||| |||||
Sbjct 107291 ATCGAAGGTGGTCAGCACCTGAACGTGAACGTAATGAACCGTGAAATGCTGCTCGATGCG 107232
Query 101976 GTTAAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGC 102035
| | ||||| || |||||||| |||||||||||||||||||| || || ||||| ||
Sbjct 107231 ATGGAACATCCTGAGAAATATCCTCAGCTGACCATCCGTGTATCTGGCTACGCAGTACGT 107172
Query 102036 TTTAACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCAC 102088
|||||||| |||||| |||||||||| ||||||||| | ||||| |||||
Sbjct 107171 TTTAACTCCCTGACTAAAGAACAGCAGCAGGACGTTATCACCCGTACTTTCAC 107119
>seq895
Length=39754
Score = 84.2 bits (92), Expect = 2e-11
Identities = 123/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 101916 ATTGAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCA 101975
||||| || || || ||||||||||||||||| || || || | || |||||
Sbjct 12052 ATTGAGGGCGGGCAGCACCTGAACGTTAACGTGATGAACCGGGAGATGCTCCTCGATGCC 11993
Query 101976 GTTAAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGC 102035
|| |||||| || || || ||| | ||||||||||| || || || ||||| || ||
Sbjct 11992 ATTGCGCATCCCGAGAACTACCCGAACCTGACCATCCGCGTCTCGGGCTATGCGGTGCGG 11933
Query 102036 TTTAACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCACC 102089
||||| | ||||| | || ||||||| || || || | || || || |||
Sbjct 11932 TTTAATGCCCTGACGCGCGAGCAGCAGCAGGATGTGATTTCGCGAACGTTTACC 11879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 534656810052160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |