Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_028855.1 Length=44846 Score E Sequences producing significant alignments: (Bits) Value seq1230 181 3e-41 >seq1230 Length=13776 Score = 181 bits (200), Expect = 3e-41 Identities = 405/596 (68%), Gaps = 19/596 (3%) Strand=Plus/Minus Query 27508 TCCTAATCCAAATTCAGGATTCATTAGCTTAATTGATTTAAATTCCATTTCATGTCTAAA 27567 ||| |||||| |||| |||||||||||||| | | |||||| || | ||||| ||| Sbjct 4231 TCCCAATCCATATTCTGGATTCATTAGCTTGAGCGTTTTAAACTCTAGTTCATCCTGAAA 4172 Query 27568 GCTTTTGAATGTTGAAAAGCATGTTAAGCAACAATGATTAGTCTTAACCACAAATTCACC 27627 ||||| ||||| ||||||||||| | || || || | ||||| | | | Sbjct 4171 ACTTTTAAATGTCGAAAAGCATGTGAGACAGCAGTGTATGGTCTTGATGTGATAGGTCTG 4112 Query 27628 GTTACCCACTTCTTTCAAATAAGCTTCA--AGCTCATGATTAAAACCAAGCCATTTCTTT 27685 | || || || |||||||| ||||| | || | || ||| || |||| ||||| Sbjct 4111 ATCTCCTACATCATTCAAATA--CTTCACTAATTCCTCATCAAAGCCCTCCCATCTCTTT 4054 Query 27686 TTAAAACCACCATCATTGACATAAATGTCAGATTCAACA---TCACC---CAAGAACTGC 27739 |||||||||||||| ||||||| || || || | | ||| ||| |||| | Sbjct 4053 TTAAAACCACCATCCATGACATAGATATCCCCATCGTGACTCTGACCAGACAAAAACT-C 3995 Query 27740 CACAAATG-CAT-AACAGTATCAGTAGCCAATTGAAACTCACAATCAACCGTTTCGCCTG 27797 | || | ||| ||| || | || | |||||||||| || || |||| || | Sbjct 3994 AATTAAGGTCATCAACTGTGGACAT-GCAAGTTGAAACTCAGTGTCGACGATTTCACCAG 3936 Query 27798 TTTTCTCATTAACCGCATGAATTCGACTAACGATATGAAAACTTTGCTCTGC-CGGTATC 27856 ||| || | || ||||| | |||| |||||||||||||||||| | ||| ||| || Sbjct 3935 TTTGATCCTGTACAGCATGCACACGACAAACGATATGAAAACTTTGTT-TGCTCGGAATG 3877 Query 27857 GTCTGCGTCTTTAATGCTAAAGCCAAATCACCCTTATGCGCCTTCATCCAGACTTTAAGC 27916 ||||| | || | ||| | || | ||| || ||||| ||||||||||| || ||||| Sbjct 3876 GTCTGGGATTTAAGTGCAAGTGCTAGATCTCCTTTATGAGCCTTCATCCATACATTAAGT 3817 Query 27917 GGTGTATGAGTAGACTCTTGTGGATCTACACCATTAAGCAAATGATGAAGCTCAATAATA 27976 |||| || ||| | |||| ||||||| ||||||||||| || || || || Sbjct 3816 GGTGAGAACGTTTCCTCATCACAATCTTCACCATTCAGCAAATGATGCAGTTCTATGATC 3757 Query 27977 CTTTTAGCCTCATTAACCTCCCAAGTCATTTGAAACTTGTGAATCTTCTGCTTTACAACC 28036 | ||| || ||||| |||||| ||| || ||||| |||| || || |||| Sbjct 3756 CGTTTGGCTTCATTCGTTTCCCAAAACATCTGGAACTTATGAACTTTTTGAAGCCGAACC 3697 Query 28037 TGCTTCCCGTTGTATTTTTTATTCCG---CTTTTTCATACAGCACCTTTGATTTTT 28089 || ||| ||||| ||||| || |||||||| | || || || | |||| Sbjct 3696 TGACGGGGGTTATATTTCTTATTGCGTGATTTTTTCATGCTGCCCCCTTCACTTTT 3641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143382545349024