Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_028881.1 Length=170473 Score E Sequences producing significant alignments: (Bits) Value seq974 122 9e-23 >seq974 Length=31311 Score = 122 bits (134), Expect = 9e-23 Identities = 247/367 (67%), Gaps = 0/367 (0%) Strand=Plus/Plus Query 142901 TCAACGCCTTTGTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGA 142960 ||||| || |||||||||||| || ||||| |||| ||||||| ||||| ||||| Sbjct 1 TCAACACCACGGTTGTTTTTCAGGACCAGCAGGCTTTCCACTTCCAGGTGCCACATAGGG 60 Query 142961 TAATAAGCAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACTGCAGTC 143020 || | || ||||| ||||| || | || || || || || ||||| || || ||| Sbjct 61 TAGAACAGGGTCGCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGATTTTACCGCCGTC 120 Query 143021 TGGAAATGCTTCCAGAATGGAATAACACCGGTATGTTTGACTTCACCCATACCAATACGA 143080 ||||| ||||| |||| || ||| ||||| || ||||||| | ||| | Sbjct 121 TGGAAGTGCTTATAGAACGGGATACAGCCGGTGTGGAATGCTTCACCGCCGCGAATCGGG 180 Query 143081 GAACCTTCAGCACGAATCATACCAACGTTGATACCAATACCTGCACGTTTAGAAATATAC 143140 || ||||| || ||| ||||||| || ||||| ||||| | |||| || Sbjct 181 CTGCCCAGCGCACGGATGCGACCGGCGTTGATGCCGATACCGGCACGCTGGGAAACGTAT 240 Query 143141 TCGATTATTGAGTTAGCAGTTTTATTAATTGATTTCAGCGAGTCACCTGCTTCAATAACA 143200 | | || | | | | || || || || | ||| |||||| || || | Sbjct 241 TTCACGATGGCGCTGGACGTGGCGTTGATGGAATCCAGGCTGTCACCACACTCGATCAGT 300 Query 143201 ACGCAAGAACTAAACTGACGGGTCGGGGTACGAGCACCAGCCATAATAGGAGTAGGCAAT 143260 ||||| || || ||||||||||| ||||| || | |||| ||| || || ||||||| Sbjct 301 ACGCAGGAGCTGAACTGACGGGTTGGGGTGCGCACGCCAGACATGATTGGCGTAGGCAGA 360 Query 143261 GAAATCT 143267 ||||||| Sbjct 361 GAAATCT 367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545373369727920