Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_028925.1 Length=170822 Score E Sequences producing significant alignments: (Bits) Value seq974 122 1e-22 >seq974 Length=31311 Score = 122 bits (134), Expect = 1e-22 Identities = 278/417 (67%), Gaps = 6/417 (1%) Strand=Plus/Plus Query 143139 TCAACGCCCTTGTTGTTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCATAAAGGA 143198 ||||| || |||||| ||||| || || | |||| ||||||| ||||| | ||| Sbjct 1 TCAACACCACGGTTGTTTTTCAGGACCAGCAGGCTTTCCACTTCCAGGTGCCACATAGGG 60 Query 143199 TAATAAGCAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACAGGATTTAACAGCCGTT 143258 || | || ||||| ||||| || | || || || || |||||||| || ||||| Sbjct 61 TAGAACAGGGTCGCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGATTTTACCGCCGTC 120 Query 143259 TGGAAATGTTTCCAGAACGGAATAACACCAGTATGGCGAACTTCACCCATACCGATTTTC 143318 ||||| || || ||||||| ||| || || ||| ||||||| ||| || Sbjct 121 TGGAAGTGCTTATAGAACGGGATACAGCCGGTGTGGAATGCTTCACCG---CCGCGAATC 177 Query 143319 GAACCTTCA---GCACGAATCATACCAACGTTGATGCCGATACCCGCACGCTTACTGATA 143375 | | | ||||| || ||| |||||||||||||||| ||||||| | Sbjct 178 GGGCTGCCCAGCGCACGGATGCGACCGGCGTTGATGCCGATACCGGCACGCTGGGAAACG 237 Query 143376 TATTCGATGATTGAATTGGCCGTCTTATTAATTGACTTCAGGGAGTCAGCAGCTTCGATA 143435 |||| | ||| | ||| ||| || || || | |||| |||| || ||||| Sbjct 238 TATTTCACGATGGCGCTGGACGTGGCGTTGATGGAATCCAGGCTGTCACCACACTCGATC 297 Query 143436 ACCACACAGGAACTGAACTGCCTGGTAGGTGTTCTGGCGCCCGCCATGATGGGCGTGGGC 143495 | || ||||| |||||||| | ||| || || | |||| | |||||| ||||| ||| Sbjct 298 AGTACGCAGGAGCTGAACTGACGGGTTGGGGTGCGCACGCCAGACATGATTGGCGTAGGC 357 Query 143496 AACGAAACCTGTCTTGTGGATACTGCATCATAAAAACGGCAAACGTGCTTCAGACGG 143552 | |||| || || ||||| ||||| || ||||| |||| | ||||||| Sbjct 358 AGAGAAATCTTGAACGTCGATACCGCATCGTAGAAACGCTTCACGTAATCCAGACGG 414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546490144683680