Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_029013.1
Length=177688
Score E
Sequences producing significant alignments: (Bits) Value
seq974 174 2e-38
seq236 147 2e-30
seq962 138 1e-27
seq637 114 1e-20
seq754 82.4 9e-11
>seq974
Length=31311
Score = 174 bits (192), Expect = 2e-38
Identities = 252/356 (71%), Gaps = 0/356 (0%)
Strand=Plus/Plus
Query 77226 TCAACACCTTTGTTGTTTTTCAGAACCAGCAGGTTTTCAACTTCCAAATGCCAGATCGGA 77285
|||||||| |||||||||||| ||||||||| |||| ||||||| ||||| || ||
Sbjct 1 TCAACACCACGGTTGTTTTTCAGGACCAGCAGGCTTTCCACTTCCAGGTGCCACATAGGG 60
Query 77286 TAATACAACGTTGCAGCACCACCACGAACGCCACCTTGTGAACAGGATTTAACCGCTGTC 77345
|| ||| || |||||||| || || ||||| || || || |||||||| ||||| |||
Sbjct 61 TAGAACAGGGTCGCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGATTTTACCGCCGTC 120
Query 77346 TGAATATGTTTCCAGAACGGGATCACGCCTGTATGTACTGCTTCACCACCACGGATTTTA 77405
|| | || || |||||||||| ||| || || | ||||||||| || || ||
Sbjct 121 TGGAAGTGCTTATAGAACGGGATACAGCCGGTGTGGAATGCTTCACCGCCGCGAATCGGG 180
Query 77406 GAACCCATTGCGCGAATGTGTCCAGCATTAACACCGATACCCGCGCGTTGTGAAATATAC 77465
|||| || || ||| | || || || | |||||||| || || || |||| ||
Sbjct 181 CTGCCCAGCGCACGGATGCGACCGGCGTTGATGCCGATACCGGCACGCTGGGAAACGTAT 240
Query 77466 TTCACGATCGCAGAGGTTACAGCATTCAGAGAACCCAGTGAATCACCTGATTCAATCACT 77525
|||||||| || || || || | ||| |||| ||||| | || |||| |
Sbjct 241 TTCACGATGGCGCTGGACGTGGCGTTGATGGAATCCAGGCTGTCACCACACTCGATCAGT 300
Query 77526 ACGCAACTGGAAAACTGACGCGTAGGAGTACGCACACCCGCCATAATAGGCGTAGG 77581
||||| | |||||||| || || || ||||| || | ||| || ||||||||
Sbjct 301 ACGCAGGAGCTGAACTGACGGGTTGGGGTGCGCACGCCAGACATGATTGGCGTAGG 356
>seq236
Length=545527
Score = 147 bits (162), Expect = 2e-30
Identities = 144/186 (77%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 67743 TTACATGCTTTCCGTAAAGGTTCTGGCGATAACGTCGCGCTGTTGTTCTGGAGTCAGTGC 67802
||||| |||||| |||||||| | ||||||||||||||||| |||||||| ||||| |
Sbjct 30895 TTACAGGCTTTCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTCAGAGA 30836
Query 67803 ATTAAAGCGAACTGCGTAACCTGAAACGCGGATCGTTAACTGTGGGTACTTCTCAGGATG 67862
|| ||||| || || ||||| || ||||| || || | ||| ||||| || || || ||
Sbjct 30835 GTTGAAGCGTACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCTGGGTG 30776
Query 67863 TTTCACAGCATCTTCCAGGGTTTCGCGACGTAGCACATTCACGTTTAGGTGCTGTCCACC 67922
| || || || ||| |||||||| || || || || ||||| |||||||| |||||
Sbjct 30775 CTCAACCGCGTCCATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGACCACC 30716
Query 67923 TTCAAC 67928
||| ||
Sbjct 30715 TTCCAC 30710
>seq962
Length=32987
Score = 138 bits (152), Expect = 1e-27
Identities = 254/368 (69%), Gaps = 6/368 (2%)
Strand=Plus/Plus
Query 142010 CATACGGAGCCAGCACTTTATCAA--CGTTTGCAAAGGTTGTCCCGCCGTACTGGTGAGA 142067
|| |||| |||||||||| |||| || || || ||| || |||||||| |||
Sbjct 25377 CAAACGGGGCCAGCACTTCGTCAATGCGGTT--AATGGTGGTGCCGCCGTAAATGTGGCT 25434
Query 142068 AGCAATCTGTGCGGTGATCTGTGCCATAAGAGCAGTCGCAACACCGATTGATTTCGGGGG 142127
|| | ||| ||| | ||||||||| | | ||||| || ||| ||||| || ||
Sbjct 25435 GGCGACCTGGGCGATAATCTGTGCCGTGACCGCAGTGGCGGTGGAGATGGATTTTGGCGG 25494
Query 142128 TTCGATGTCTGCGTTACCCATCTTGAAGCCATTAGCCAGCATACCTTTCAAATCCACCAG 142187
||| || || ||||||||||| || || || | | |||||| ||||||| || | |||
Sbjct 25495 TTCAATCTCGGCGTTACCCATTTTAAACCCGTGGGTCAGCATGCCTTTCAGGTCAATCAG 25554
Query 142188 ACAGCAGTTTGTGTATGGCGT-GAACGGGCTGTAATCCAGATCATGATAGTGGATGTCGC 142246
||||| | || | | |||||| || || ||||| ||||||||||| || |
Sbjct 25555 CATACAGTT-GAACATCGGGAAGAACGGTGAATAGTCGAGATCGTGATAGTGGATCTCAC 25613
Query 142247 CGGAGTCATGCGCTTCTACGATATGTTTCGGAAGGATATGATTACGGGCGAAATGCTTCG 142306
|| || |||||| || | || ||| || | || | |||||| | || || |
Sbjct 25614 CGCGCTCGTGCGCTGAGACCACATCGCGCGGCAGCAGGTGCTGACGGGCATAGTGTTTGG 25673
Query 142307 CTACAATACCCGCCAGCAAATCGCGCTGTGTCGGGAATACCCTTGCGTCTTTGTTCGCGT 142366
| || ||||| ||||||| ||||||||| || |||| || | ||||||||| ||||
Sbjct 25674 CGACGATACCGGCCAGCAGATCGCGCTGGGTGGGGATCACTTTACTGTCTTTGTTGGCGT 25733
Query 142367 TCTCGTTG 142374
| || |||
Sbjct 25734 TTTCATTG 25741
>seq637
Length=122170
Score = 114 bits (126), Expect = 1e-20
Identities = 135/183 (74%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 67743 TTACATGCTTTCCGTAAAGGTTCTGGCGATAACGTCGCGCTGTTGTTCTGGAGTCAGTGC 67802
||||||| | || || || | || ||||||||| |||| |||||| |||||| |
Sbjct 107106 TTACATGGACTGAGTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGA 107165
Query 67803 ATTAAAGCGAACTGCGTAACCTGAAACGCGGATCGTTAACTGTGGGTACTTCTCAGGATG 67862
||||| || |||||||| || || || ||||| || | ||| || || |||||||||||
Sbjct 107166 GTTAAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATG 107225
Query 67863 TTTCACAGCATCTTCCAGGGTTTCGCGACGTAGCACATTCACGTTTAGGTGCTGTCCACC 67922
|| || ||||| ||| |||| || | || |||||||| |||||||| |||||
Sbjct 107226 TTCCATCGCATCGAGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTGCTGACCACC 107285
Query 67923 TTC 67925
|||
Sbjct 107286 TTC 107288
>seq754
Length=71200
Score = 82.4 bits (90), Expect = 9e-11
Identities = 138/200 (69%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 78502 AGAGCGTAGGAGGCGATATTGAACGGCAACCCTAAGAAGACATCAACCGAACGCTGATAC 78561
|| || ||| ||| || || ||||||| || | ||| |||||| |||||||| ||
Sbjct 66563 AGCGCATAGCTGGCAATGTTAAACGGCAGGCCGAGGAACACATCACAGGAACGCTGGTAG 66504
Query 78562 CACTGTAGAGACAGTTTACCGTTGATTACGACGAACTGGAAGAAACAGTGACACGGACGC 78621
||| || || || |||| ||| |||||||||||| ||| ||||| |
Sbjct 66503 AGCTGGCAGGAGAGCTTTCCGTCAGCGACGTAGAACTGGAAGAACGCGTGGCACGGTGCC 66444
Query 78622 AATGCCATTTTATCCAGATCAACAGGGTTCCATGCGGAAACGATGATCCCGCGATCGTCT 78681
| |||||||| ||||| || | |||||| |||||||| ||||| | ||| ||||
Sbjct 66443 AGCGCCATTTTGTCCAGCTCGCCGACGTTCCAGGCGGAAACAATGATTCGGCGCGAGTCT 66384
Query 78682 GGCGTGGTTTTCAGTTCGTT 78701
|| | ||||||| | |||
Sbjct 66383 GGATCGTTTTTCAGCTGGTT 66364
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 568460851979520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |