Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq974 174 2e-38 seq236 147 2e-30 seq962 138 1e-27 seq637 114 1e-20 seq754 82.4 9e-11 >seq974 Length=31311 Score = 174 bits (192), Expect = 2e-38 Identities = 252/356 (71%), Gaps = 0/356 (0%) Strand=Plus/Plus Query 77226 TCAACACCTTTGTTGTTTTTCAGAACCAGCAGGTTTTCAACTTCCAAATGCCAGATCGGA 77285 |||||||| |||||||||||| ||||||||| |||| ||||||| ||||| || || Sbjct 1 TCAACACCACGGTTGTTTTTCAGGACCAGCAGGCTTTCCACTTCCAGGTGCCACATAGGG 60 Query 77286 TAATACAACGTTGCAGCACCACCACGAACGCCACCTTGTGAACAGGATTTAACCGCTGTC 77345 || ||| || |||||||| || || ||||| || || || |||||||| ||||| ||| Sbjct 61 TAGAACAGGGTCGCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGATTTTACCGCCGTC 120 Query 77346 TGAATATGTTTCCAGAACGGGATCACGCCTGTATGTACTGCTTCACCACCACGGATTTTA 77405 || | || || |||||||||| ||| || || | ||||||||| || || || Sbjct 121 TGGAAGTGCTTATAGAACGGGATACAGCCGGTGTGGAATGCTTCACCGCCGCGAATCGGG 180 Query 77406 GAACCCATTGCGCGAATGTGTCCAGCATTAACACCGATACCCGCGCGTTGTGAAATATAC 77465 |||| || || ||| | || || || | |||||||| || || || |||| || Sbjct 181 CTGCCCAGCGCACGGATGCGACCGGCGTTGATGCCGATACCGGCACGCTGGGAAACGTAT 240 Query 77466 TTCACGATCGCAGAGGTTACAGCATTCAGAGAACCCAGTGAATCACCTGATTCAATCACT 77525 |||||||| || || || || | ||| |||| ||||| | || |||| | Sbjct 241 TTCACGATGGCGCTGGACGTGGCGTTGATGGAATCCAGGCTGTCACCACACTCGATCAGT 300 Query 77526 ACGCAACTGGAAAACTGACGCGTAGGAGTACGCACACCCGCCATAATAGGCGTAGG 77581 ||||| | |||||||| || || || ||||| || | ||| || |||||||| Sbjct 301 ACGCAGGAGCTGAACTGACGGGTTGGGGTGCGCACGCCAGACATGATTGGCGTAGG 356 >seq236 Length=545527 Score = 147 bits (162), Expect = 2e-30 Identities = 144/186 (77%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 67743 TTACATGCTTTCCGTAAAGGTTCTGGCGATAACGTCGCGCTGTTGTTCTGGAGTCAGTGC 67802 ||||| |||||| |||||||| | ||||||||||||||||| |||||||| ||||| | Sbjct 30895 TTACAGGCTTTCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTCAGAGA 30836 Query 67803 ATTAAAGCGAACTGCGTAACCTGAAACGCGGATCGTTAACTGTGGGTACTTCTCAGGATG 67862 || ||||| || || ||||| || ||||| || || | ||| ||||| || || || || Sbjct 30835 GTTGAAGCGTACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCTGGGTG 30776 Query 67863 TTTCACAGCATCTTCCAGGGTTTCGCGACGTAGCACATTCACGTTTAGGTGCTGTCCACC 67922 | || || || ||| |||||||| || || || || ||||| |||||||| ||||| Sbjct 30775 CTCAACCGCGTCCATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGACCACC 30716 Query 67923 TTCAAC 67928 ||| || Sbjct 30715 TTCCAC 30710 >seq962 Length=32987 Score = 138 bits (152), Expect = 1e-27 Identities = 254/368 (69%), Gaps = 6/368 (2%) Strand=Plus/Plus Query 142010 CATACGGAGCCAGCACTTTATCAA--CGTTTGCAAAGGTTGTCCCGCCGTACTGGTGAGA 142067 || |||| |||||||||| |||| || || || ||| || |||||||| ||| Sbjct 25377 CAAACGGGGCCAGCACTTCGTCAATGCGGTT--AATGGTGGTGCCGCCGTAAATGTGGCT 25434 Query 142068 AGCAATCTGTGCGGTGATCTGTGCCATAAGAGCAGTCGCAACACCGATTGATTTCGGGGG 142127 || | ||| ||| | ||||||||| | | ||||| || ||| ||||| || || Sbjct 25435 GGCGACCTGGGCGATAATCTGTGCCGTGACCGCAGTGGCGGTGGAGATGGATTTTGGCGG 25494 Query 142128 TTCGATGTCTGCGTTACCCATCTTGAAGCCATTAGCCAGCATACCTTTCAAATCCACCAG 142187 ||| || || ||||||||||| || || || | | |||||| ||||||| || | ||| Sbjct 25495 TTCAATCTCGGCGTTACCCATTTTAAACCCGTGGGTCAGCATGCCTTTCAGGTCAATCAG 25554 Query 142188 ACAGCAGTTTGTGTATGGCGT-GAACGGGCTGTAATCCAGATCATGATAGTGGATGTCGC 142246 ||||| | || | | |||||| || || ||||| ||||||||||| || | Sbjct 25555 CATACAGTT-GAACATCGGGAAGAACGGTGAATAGTCGAGATCGTGATAGTGGATCTCAC 25613 Query 142247 CGGAGTCATGCGCTTCTACGATATGTTTCGGAAGGATATGATTACGGGCGAAATGCTTCG 142306 || || |||||| || | || ||| || | || | |||||| | || || | Sbjct 25614 CGCGCTCGTGCGCTGAGACCACATCGCGCGGCAGCAGGTGCTGACGGGCATAGTGTTTGG 25673 Query 142307 CTACAATACCCGCCAGCAAATCGCGCTGTGTCGGGAATACCCTTGCGTCTTTGTTCGCGT 142366 | || ||||| ||||||| ||||||||| || |||| || | ||||||||| |||| Sbjct 25674 CGACGATACCGGCCAGCAGATCGCGCTGGGTGGGGATCACTTTACTGTCTTTGTTGGCGT 25733 Query 142367 TCTCGTTG 142374 | || ||| Sbjct 25734 TTTCATTG 25741 >seq637 Length=122170 Score = 114 bits (126), Expect = 1e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 67743 TTACATGCTTTCCGTAAAGGTTCTGGCGATAACGTCGCGCTGTTGTTCTGGAGTCAGTGC 67802 ||||||| | || || || | || ||||||||| |||| |||||| |||||| | Sbjct 107106 TTACATGGACTGAGTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGA 107165 Query 67803 ATTAAAGCGAACTGCGTAACCTGAAACGCGGATCGTTAACTGTGGGTACTTCTCAGGATG 67862 ||||| || |||||||| || || || ||||| || | ||| || || ||||||||||| Sbjct 107166 GTTAAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATG 107225 Query 67863 TTTCACAGCATCTTCCAGGGTTTCGCGACGTAGCACATTCACGTTTAGGTGCTGTCCACC 67922 || || ||||| ||| |||| || | || |||||||| |||||||| ||||| Sbjct 107226 TTCCATCGCATCGAGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTGCTGACCACC 107285 Query 67923 TTC 67925 ||| Sbjct 107286 TTC 107288 >seq754 Length=71200 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 78502 AGAGCGTAGGAGGCGATATTGAACGGCAACCCTAAGAAGACATCAACCGAACGCTGATAC 78561 || || ||| ||| || || ||||||| || | ||| |||||| |||||||| || Sbjct 66563 AGCGCATAGCTGGCAATGTTAAACGGCAGGCCGAGGAACACATCACAGGAACGCTGGTAG 66504 Query 78562 CACTGTAGAGACAGTTTACCGTTGATTACGACGAACTGGAAGAAACAGTGACACGGACGC 78621 ||| || || || |||| ||| |||||||||||| ||| ||||| | Sbjct 66503 AGCTGGCAGGAGAGCTTTCCGTCAGCGACGTAGAACTGGAAGAACGCGTGGCACGGTGCC 66444 Query 78622 AATGCCATTTTATCCAGATCAACAGGGTTCCATGCGGAAACGATGATCCCGCGATCGTCT 78681 | |||||||| ||||| || | |||||| |||||||| ||||| | ||| |||| Sbjct 66443 AGCGCCATTTTGTCCAGCTCGCCGACGTTCCAGGCGGAAACAATGATTCGGCGCGAGTCT 66384 Query 78682 GGCGTGGTTTTCAGTTCGTT 78701 || | ||||||| | ||| Sbjct 66383 GGATCGTTTTTCAGCTGGTT 66364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568460851979520