Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_029071.1 Length=41085 Score E Sequences producing significant alignments: (Bits) Value seq997 93.3 1e-14 >seq997 Length=29618 Score = 93.3 bits (102), Expect = 1e-14 Identities = 195/288 (68%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 13461 GCCGAATTGCTGGAAATGAAAGCGGCGCAACTTGGCGTAAGTGCTCAGGCCGCGCCATTT 13520 || ||| || | || | ||||| || ||||||||||| | || || || || | Sbjct 4686 GCAGAACTGTTAGAGCTAAAAGCAGCCCAACTTGGCGTGTCCGATCGTGCTGCACCGATG 4627 Query 13521 ATCGCACAGCTTAAAGCGCAAGAAAAACAGATGAATTTAACCGGAATTAGCGCGGGGCAA 13580 ||||| | || |||| ||| || || | ||| | | | || |||||||||||| Sbjct 4626 ATCGCCCGACTGAAAGAGCAGGAGGAAGCGTGGAAGTCAGGAGCGATCAGCGCGGGGCAA 4567 Query 13581 TACAAGCAA-GCTATGGCGCAACTTCCGGCTCAGATCACTGACGTTGTAACGTCGCTAGC 13639 ||| |||| || ||| | || ||| || || || ||| |||| || || || || Sbjct 4566 TACC-GCAACGCGATGCGTTATCTCCCGATGCAAATGACCGACATTGTGACCTCACTGGC 4508 Query 13640 TTCCGGTATGCCTGTTTGGTTGGTTGCAATCCAGCAGGGTGGACAGATTAAGGATTCTTT 13699 ||||||||||| |||| |||| || || |||||||| || ||| | ||||| || Sbjct 4507 GTCCGGTATGCCGGTTTATATGGTGGCCATTCAGCAGGGCGGCCAGCTGCGCGATTCGTT 4448 Query 13700 TGGCGGCGTTGGTAACACGTTTAAAGCGCTGTTGTCGTTTCTGAATCC 13747 |||||| || || | | |||||| |||||||| | ||| ||| Sbjct 4447 TGGCGGTGTAAACAATGCTCTGAAAGCGATGTTGTCGATGGTGACTCC 4400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131347601743916