Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_029091.1 Length=168771 Score E Sequences producing significant alignments: (Bits) Value seq236 183 3e-41 seq637 131 2e-25 >seq236 Length=545527 Score = 183 bits (202), Expect = 3e-41 Identities = 150/181 (83%), Gaps = 1/181 (1%) Strand=Plus/Plus Query 123121 GTCAACATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTAGAAGATGCAGTTAAGCATC 123180 |||| || || ||||| ||||| ||||| || ||||| || || || ||| |||| | Sbjct 30720 GTCAGCACCTTAACGTAAACGTACTGCGCCGCGAAACGCTGATGGACGCGGTTGAGCACC 30779 Query 123181 CAGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCTTTAACTCTC 123240 |||||||||| |||||||||||||| || || ||||||||||| || ||||| ||||||| Sbjct 30780 CAGAAAAATACCCGCAGCTGACCATTCGCGTGTCTGGTTATGCGGTACGCTTCAACTCTC 30839 Query 123241 TGACTCCGGAACAGCAGCGCGACGTTATCGCTCGCACCTTTACTGAGAGTCTATAATGGC 123300 |||| || ||||||||||||||||||||||| || ||||||||||| || || ||| ||| Sbjct 30840 TGACCCCAGAACAGCAGCGCGACGTTATCGCGCGTACCTTTACTGAAAGCCTGTAA-GGC 30898 Query 123301 T 123301 | Sbjct 30899 T 30899 >seq637 Length=122170 Score = 131 bits (144), Expect = 2e-25 Identities = 129/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 123121 GTCAACATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTAGAAGATGCAGTTAAGCATC 123180 |||| || |||||||| ||||| || ||||||| || ||||| | | |||| Sbjct 107281 GTCAGCACCTGAACGTGAACGTAATGAACCGTGAAATGCTGCTCGATGCGATGGAACATC 107222 Query 123181 CAGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCTTTAACTCTC 123240 | || |||||||| ||||||||||||||||||||||| || ||||| || |||||||| | Sbjct 107221 CTGAGAAATATCCTCAGCTGACCATCCGTGTATCTGGCTACGCAGTACGTTTTAACTCCC 107162 Query 123241 TGACTCCGGAACAGCAGCGCGACGTTATCGCTCGCACCTTTACTGAG 123287 ||||| |||||||||| ||||||||| | || || || ||| || Sbjct 107161 TGACTAAAGAACAGCAGCAGGACGTTATCACCCGTACTTTCACTCAG 107115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539927091863440