Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_029120.1 Length=60875 Score E Sequences producing significant alignments: (Bits) Value seq997 298 2e-76 >seq997 Length=29618 Score = 298 bits (330), Expect = 2e-76 Identities = 370/504 (73%), Gaps = 13/504 (3%) Strand=Plus/Minus Query 25514 AGTTCTGGCGCTG--ATTGCCGCAGGTGCTTCTGCGCCTGAAATCCTCGACCAGTTTCTG 25571 |||||||| |||| |||| || |||||| |||| | | ||| ||||| ||||||||| Sbjct 20896 AGTTCTGGGGCTGGTATTG--GCTGGTGCTCCTGCATCCGTAATTCTCGATCAGTTTCTG 20839 Query 25572 GATGAAAAGGAAGGTAACCACACCACGGCATACCGTGATGGTGTGGGTATCTGGACCATC 25631 ||||||| || |||||| | |||||| ||| ||||||| ||||| ||||| || Sbjct 20838 AATGAAAAAGAGGGTAACAGCCTCACGGCCTACAAAGATGGTGGTGGTATTTGGACTATT 20779 Query 25632 TGCCGTGGAGCCACCCGGGTGGATGGTAAGCCTGTGATTCCTGGCATGAAGCTGTCGAAG 25691 ||||| || || || ||| ||| |||| || || | | |||||||| || | || Sbjct 20778 TGCCGCGGCGCAACGATGGTTGATCGTAAACCGGTTGTGCAGGGCATGAAATTGACACAG 20719 Query 25692 GAAAAATGCGACCGGGTTAACGCTATCGAACGGGATAAGGCGCTGGCATGGGTGGCGAAG 25751 | |||||| | | ||| || ||||||||||| ||||||| ||||||||||| | Sbjct 20718 GCCAAATGCAATCTGGTGAATGCTATCGAACGCAATAAGGCTCTGGCATGGGTTGACCGC 20659 Query 25752 AACATCAGAGTGCCACTGACTGAACCCCAGAAAGCGGGTATTGCGTCATTCTGTCCTTAC 25811 || || || || || || ||||| |||||||| || || || || |||||||| ||| Sbjct 20658 AATATTTCGGTACCGCTTACCGAACCGCAGAAAGCTGGAATCGCATCTTTCTGTCCGTAC 20599 Query 25812 AACATTGGCCCCGGTAAGTGTTTCCCGTCGACGTTTTATAAACGAATTAATGCAGGTGAT 25871 ||||| || || |||||||| |||||||| ||||| ||||| || || ||||| ||||| Sbjct 20598 AACATCGGGCCGGGTAAGTGCTTCCCGTCAACGTTCTATAAGCGCATCAATGCCGGTGAC 20539 Query 25872 CGAAAAGGTGCCTGCGAAGCGATTCGCTGGTGGATTAAGGACGGTGGCAGAGACTGCCG- 25930 || || || ||||| || |||||||||||||||| |||| |||| | |||||||| Sbjct 20538 CGCCCCGGGGCATGCGAGGCAATTCGCTGGTGGATTAGAGACGCTGGCCGCGACTGCCGC 20479 Query 25931 -----TATCCGCTCAAATAA---TTGCTACGGTCAGGTATCAAGACGTGACCAGGAGAGT 25982 || || || || ||||||||||||||| | | || |||||||| ||| Sbjct 20478 CTGACTAAAGGCCAGAAGAACGGCTGCTACGGTCAGGTAGAACGGCGAGACCAGGAAAGT 20419 Query 25983 GCGCTGTCATGCTGGGGTATCGAC 26006 || || | |||||||| || ||| Sbjct 20418 GCTTTGGCGTGCTGGGGGATAGAC 20395 Score = 158 bits (174), Expect = 5e-34 Identities = 239/336 (71%), Gaps = 18/336 (5%) Strand=Plus/Minus Query 27082 AATCATTACCGCGATAACGCCATAACCTACAAAGAGCAGCGCGATAAAAAAGTCAGTGAG 27141 || || || ||||| |||||||| |||||||||||||||||||||||| | || |||| Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAA---GCCACTGAG 18129 Query 27142 ---CTGGAGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATGTTGCT 27198 || | ||| || || ||||| | || |||||| ||||||||||||| ||| Sbjct 18128 AAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCT 18069 Query 27199 GCACTTGATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTT 27258 || || ||||||| |||| | | ||| || ||||||| || | | ||| ||| Sbjct 18068 GCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTG 18009 Query 27259 C---GCGCTGACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAGGT 27315 | ||| || | |||| | || | || |||| | ||||||| | |||||| | Sbjct 18008 CATAGCGATGTCATTGCTGGCCGTAAGCGG---CTGCAGCTCAACGCAAACTGTCCCG-- 17954 Query 27316 CCCGTGCGTGAAGCCACCGGCACCGCCCGCGTGGATAATGCAACCGGCCCCCGACTGGCA 27375 || || ||| |||||||||| | || ||| |||| |||||||| |||| | Sbjct 17953 --CGAACGG--AGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACT 17898 Query 27376 GACACCGCTGAACGGGATTATTTCACCCTCAGAGAG 27411 ||| ||||||||||||||||||||| ||||||| || Sbjct 17897 GACTCCGCTGAACGGGATTATTTCATCCTCAGAAAG 17862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194674252620036