Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_029120.1
Length=60875
Score E
Sequences producing significant alignments: (Bits) Value
seq997 298 2e-76
>seq997
Length=29618
Score = 298 bits (330), Expect = 2e-76
Identities = 370/504 (73%), Gaps = 13/504 (3%)
Strand=Plus/Minus
Query 25514 AGTTCTGGCGCTG--ATTGCCGCAGGTGCTTCTGCGCCTGAAATCCTCGACCAGTTTCTG 25571
|||||||| |||| |||| || |||||| |||| | | ||| ||||| |||||||||
Sbjct 20896 AGTTCTGGGGCTGGTATTG--GCTGGTGCTCCTGCATCCGTAATTCTCGATCAGTTTCTG 20839
Query 25572 GATGAAAAGGAAGGTAACCACACCACGGCATACCGTGATGGTGTGGGTATCTGGACCATC 25631
||||||| || |||||| | |||||| ||| ||||||| ||||| ||||| ||
Sbjct 20838 AATGAAAAAGAGGGTAACAGCCTCACGGCCTACAAAGATGGTGGTGGTATTTGGACTATT 20779
Query 25632 TGCCGTGGAGCCACCCGGGTGGATGGTAAGCCTGTGATTCCTGGCATGAAGCTGTCGAAG 25691
||||| || || || ||| ||| |||| || || | | |||||||| || | ||
Sbjct 20778 TGCCGCGGCGCAACGATGGTTGATCGTAAACCGGTTGTGCAGGGCATGAAATTGACACAG 20719
Query 25692 GAAAAATGCGACCGGGTTAACGCTATCGAACGGGATAAGGCGCTGGCATGGGTGGCGAAG 25751
| |||||| | | ||| || ||||||||||| ||||||| ||||||||||| |
Sbjct 20718 GCCAAATGCAATCTGGTGAATGCTATCGAACGCAATAAGGCTCTGGCATGGGTTGACCGC 20659
Query 25752 AACATCAGAGTGCCACTGACTGAACCCCAGAAAGCGGGTATTGCGTCATTCTGTCCTTAC 25811
|| || || || || || ||||| |||||||| || || || || |||||||| |||
Sbjct 20658 AATATTTCGGTACCGCTTACCGAACCGCAGAAAGCTGGAATCGCATCTTTCTGTCCGTAC 20599
Query 25812 AACATTGGCCCCGGTAAGTGTTTCCCGTCGACGTTTTATAAACGAATTAATGCAGGTGAT 25871
||||| || || |||||||| |||||||| ||||| ||||| || || ||||| |||||
Sbjct 20598 AACATCGGGCCGGGTAAGTGCTTCCCGTCAACGTTCTATAAGCGCATCAATGCCGGTGAC 20539
Query 25872 CGAAAAGGTGCCTGCGAAGCGATTCGCTGGTGGATTAAGGACGGTGGCAGAGACTGCCG- 25930
|| || || ||||| || |||||||||||||||| |||| |||| | ||||||||
Sbjct 20538 CGCCCCGGGGCATGCGAGGCAATTCGCTGGTGGATTAGAGACGCTGGCCGCGACTGCCGC 20479
Query 25931 -----TATCCGCTCAAATAA---TTGCTACGGTCAGGTATCAAGACGTGACCAGGAGAGT 25982
|| || || || ||||||||||||||| | | || |||||||| |||
Sbjct 20478 CTGACTAAAGGCCAGAAGAACGGCTGCTACGGTCAGGTAGAACGGCGAGACCAGGAAAGT 20419
Query 25983 GCGCTGTCATGCTGGGGTATCGAC 26006
|| || | |||||||| || |||
Sbjct 20418 GCTTTGGCGTGCTGGGGGATAGAC 20395
Score = 158 bits (174), Expect = 5e-34
Identities = 239/336 (71%), Gaps = 18/336 (5%)
Strand=Plus/Minus
Query 27082 AATCATTACCGCGATAACGCCATAACCTACAAAGAGCAGCGCGATAAAAAAGTCAGTGAG 27141
|| || || ||||| |||||||| |||||||||||||||||||||||| | || ||||
Sbjct 18185 AACCACTATCGCGACAACGCCATCACCTACAAAGAGCAGCGCGATAAA---GCCACTGAG 18129
Query 27142 ---CTGGAGCTGGCAAATGCAACCATTACTGATATGCAGCAGCGCCAGCGTGATGTTGCT 27198
|| | ||| || || ||||| | || |||||| ||||||||||||| |||
Sbjct 18128 AAACTCAGCCAGGCCAACGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCT 18069
Query 27199 GCACTTGATGCCAGATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTT 27258
|| || ||||||| |||| | | ||| || ||||||| || | | ||| |||
Sbjct 18068 GCGCTGGATGCCAAATACACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTG 18009
Query 27259 C---GCGCTGACGTTGCCGCTGGTTACCGCAGCCTGCGGATCAACGCCACCTGTCCAGGT 27315
| ||| || | |||| | || | || |||| | ||||||| | |||||| |
Sbjct 18008 CATAGCGATGTCATTGCTGGCCGTAAGCGG---CTGCAGCTCAACGCAAACTGTCCCG-- 17954
Query 27316 CCCGTGCGTGAAGCCACCGGCACCGCCCGCGTGGATAATGCAACCGGCCCCCGACTGGCA 27375
|| || ||| |||||||||| | || ||| |||| |||||||| |||| |
Sbjct 17953 --CGAACGG--AGCGACCGGCACCGGCGGCATGGGCGATGCTTCCGGCCCCAGACTTACT 17898
Query 27376 GACACCGCTGAACGGGATTATTTCACCCTCAGAGAG 27411
||| ||||||||||||||||||||| ||||||| ||
Sbjct 17897 GACTCCGCTGAACGGGATTATTTCATCCTCAGAAAG 17862
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 194674252620036
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |