Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq197 93.3 3e-14 >seq197 Length=620651 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| |||||||| || ||||| || ||||| | || || ||| | | Sbjct 449564 ATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACAATTACCCTGGAAGTGGAAGCCTCA 449505 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || || || || |||||||| || |||| || | Sbjct 449504 GACACAATTGAGAAT--GTGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGACC 449447 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| || ||||| ||||| || | |||| | |||| || |||| Sbjct 449446 AGCAGAGGTTGATCTTTGCAGGCAAACAGTTGGAGGATGGCCGCACCCTGTCTGACTACA 449387 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||| ||| |||| ||||| ||||| |||| || || Sbjct 449386 ACATCCAGAAAGAGTCCACCCTGCACTTGGTGCTGCGTCTGCGAGGTGG 449338 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || ||| |||| || ||||| || | || || ||||| ||||| |||| Sbjct 446383 GACAAGGAGGGTATTCCCCCAGACCAGCAGCGTCTCATCTTCGCCGGTAAACAGCTGGAG 446324 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||||||||| |||||||||||||| ||| ||| | || ||||| || Sbjct 446323 GATGGTCGCACCTTGTCCGACTACAACATCCAAAAGGAGTCCACCCTTCACTTGGTATTA 446264 Query 28003 CGTTTGCGTGGCGGC 28017 ||| | ||||| ||| Sbjct 446263 CGTCTCCGTGGTGGC 446249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355854619291038