Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq197 93.3 3e-14
>seq197
Length=620651
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| ||||| |||||||| || ||||| || ||||| | || || ||| | |
Sbjct 449564 ATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACAATTACCCTGGAAGTGGAAGCCTCA 449505
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || | ||| || || || || |||||||| || |||| || |
Sbjct 449504 GACACAATTGAGAAT--GTGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGACC 449447
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| |||| || ||||| || ||||| ||||| || | |||| | |||| || ||||
Sbjct 449446 AGCAGAGGTTGATCTTTGCAGGCAAACAGTTGGAGGATGGCCGCACCCTGTCTGACTACA 449387
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||| |||||| ||| |||| ||||| ||||| |||| || ||
Sbjct 449386 ACATCCAGAAAGAGTCCACCCTGCACTTGGTGCTGCGTCTGCGAGGTGG 449338
Score = 86.0 bits (94), Expect = 4e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| || ||| |||| || ||||| || | || || ||||| ||||| ||||
Sbjct 446383 GACAAGGAGGGTATTCCCCCAGACCAGCAGCGTCTCATCTTCGCCGGTAAACAGCTGGAG 446324
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | |||| ||||||||| |||||||||||||| ||| ||| | || ||||| ||
Sbjct 446323 GATGGTCGCACCTTGTCCGACTACAACATCCAAAAGGAGTCCACCCTTCACTTGGTATTA 446264
Query 28003 CGTTTGCGTGGCGGC 28017
||| | ||||| |||
Sbjct 446263 CGTCTCCGTGGTGGC 446249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355854619291038
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |