Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq197 178 3e-39 seq1030 152 1e-31 seq49 86.0 1e-11 >seq197 Length=620651 Score = 178 bits (196), Expect = 3e-39 Identities = 173/223 (78%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || | || || | |||||| |||||||| ||||||||||| || || | | ||| Sbjct 446255 ACGGAGACGTAATACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGT 446314 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||||||| || || |||||||| || || || ||||| || |||| || Sbjct 446315 GCGACCATCCTCCAGCTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACC 446374 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || || || ||||||||||| || |||||| || || Sbjct 446375 CTCCTTGTCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCCGAAGCTTCAACTTCCAG 446434 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||| ||||||||||| |||||||| || || | ||||||| Sbjct 446435 AGTGATGGTCTTTCCCGTCAGAGTCTTCACGAAAATCTGCATT 446477 Score = 172 bits (190), Expect = 1e-37 Identities = 166/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||||||||| || || ||||| || || | ||||| | |||||| Sbjct 447893 AGTACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGATAGGGTGCGGCCATCT 447952 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || |||||||| || || || ||||| || || | || ||||||||| Sbjct 447953 TCTAGTTGCTTACCAGCGAAGATCAGACGCTGCTGGTCTGGGGGGATACCCTCCTTGTCC 448012 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || |||||| || |||||||| ||| Sbjct 448013 TGGATCTTGGCCTTTACATTCTCGATGGTGTCCGAAGCTTCAACTTCCAGAGTGATGGTC 448072 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||||| |||||||| || || | ||||||| Sbjct 448073 TTTCCCGTCAGAGTCTTCACGAAAATCTGCATT 448105 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||||||||||||||| || ||||| || || | ||||| | |||||| Sbjct 446949 AGTACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCT 447008 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || |||||||| || || || ||||| ||||| | || ||||||||| Sbjct 447009 TCCAACTGCTTACCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCC 447068 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || || ||||| || || | || ||||| |||||||| || Sbjct 447069 TGGATCTTAGCTTTAACATTCTCGATAGTATCGGCTGGCTCGACCTCAAGAGTGATAGTT 447128 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | |||||| Sbjct 447129 TTACCAGTAAGAGTCTTGACGAAAATCTGCAT 447160 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||||||||| |||||||| ||||| ||||| || | | || | || ||||| || || Sbjct 446729 GTGAAGAGTCGACTCTTTCTGGATATTATAGTCTGACAATGTACGGCCGTCTTCTAGTTG 446788 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || ||||||||||| || || ||||| ||||| | ||||||||||| |||||||| Sbjct 446789 TTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTT 446848 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||||| || ||||||||||| || |||||| || |||||||| ||||| || || Sbjct 446849 GGCCTTCACATTCTCGATGGTGTCTGAAGCTTCAACTTCCAGAGTGATTGTCTTGCCAGT 446908 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 || || || || || | |||||| Sbjct 446909 TAGGGTTTTCACGAAAATCTGCAT 446932 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||| || || || ||||| || || ||||| || || | | ||| | ||||| ||| Sbjct 447668 ACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCC 447727 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||| || || |||||||| || || |||||||| ||||| | || |||||||| ||| Sbjct 447728 AGCTGTTTACCAGCGAAGATGAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCTTGG 447787 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| ||||| || ||||||||||| || |||||| || || ||||| |||||| Sbjct 447788 ATCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCAACTTCCAGGGTGATGGTCTTT 447847 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || || | |||||| Sbjct 447848 CCTGTCAGAGTTTTGACGAAAATCTGCAT 447876 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| || ||||| ||||| || ||||| || |||||||| || || | | ||| Sbjct 446484 CGGAGTCGTAAAACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGATAAGGTG 446543 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || ||||| |||||||| || |||||||| || || || ||||| ||||||| ||| Sbjct 446544 CGGCCGTCTTCTAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGAGGAATGCCT 446603 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| |||||||| || || || ||||||||||| || ||| || || || Sbjct 446604 TCCTTGTCTTGGATCTTAGCCTTTACATTCTCGATGGTGTCTGAAGCTTCGACTTCTAGG 446663 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || || || || || || | |||||| Sbjct 446664 GTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 446704 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| || ||||| ||||| || ||||| || |||||||| || || | | ||| Sbjct 448112 CGGAGTCGTAAAACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGATAAGGTG 448171 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || ||||| |||||||| || |||||||| || || || ||||| ||||||| ||| Sbjct 448172 CGGCCGTCTTCTAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGAGGAATGCCT 448231 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| |||||||| || || || ||||||||||| || ||| || || || Sbjct 448232 TCCTTGTCTTGGATCTTAGCCTTTACATTCTCGATGGTGTCTGAAGCTTCGACTTCCAGG 448291 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || || || || || || | |||||| Sbjct 448292 GTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 448332 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||| || || || ||||| || || ||||| || || | | ||| | ||||| || Sbjct 448381 ACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCT 448440 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||| ||||| |||||||| | | || ||||| || |||| ||| || ||||| ||| Sbjct 448441 AGCTGGTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCTTGG 448500 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| ||| || || || ||| |||| || |||||| || |||||||| |||||| Sbjct 448501 ATCTTGGCTTTGACATTCTCAATGATGTCTGAAGCTTCAACTTCCAGAGTGATGGTCTTT 448560 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| ||||| | |||||| Sbjct 448561 CCCGTCAGAGTCTTGACAAAGATCTGCAT 448589 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||| || || || || ||||| |||||||| || || | | ||| | || ||||| Sbjct 447180 ACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCGTCTTCA 447239 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 |||||||||||||| ||||| | | || ||||| || |||| ||| || ||||| ||| Sbjct 447240 AGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCTTGG 447299 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| ||| || || ||||||||||| || |||||| || |||||||| ||||| Sbjct 447300 ATCTTGGCTTTGACATTCTCGATGGTGTCTGAAGCTTCAACTTCCAGAGTGATGGTCTTG 447359 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || || | |||||| Sbjct 447360 CCAGTCAGGGTTTTCACGAAAATCTGCAT 447388 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || |||||||| ||||| ||||| || | | || | || ||||| || || Sbjct 448886 GTGAAGGGTTGACTCTTTCTGGATATTATAGTCAGACAATGTACGGCCGTCTTCTAGTTG 448945 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || ||||||||||| || || ||||| ||||| | ||||||||||| |||||||| Sbjct 448946 TTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCTTGGATCTT 449005 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||||| || ||||||||||| || ||| || || |||||||| ||||| || || Sbjct 449006 GGCCTTCACATTCTCGATGGTGTCTGAAGCTTCCACTTCCAGAGTGATTGTCTTGCCAGT 449065 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 || || || || || | |||||| Sbjct 449066 TAGGGTTTTCACGAAAATCTGCAT 449089 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||||||||| |||||||| || || | | ||| | || ||| Sbjct 449581 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCGTCT 449640 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || || ||||| || || | || || |||||| Sbjct 449641 TCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCTTTGTCC 449700 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| | || ||||| | |||||| || Sbjct 449701 TGGATCTTCGCCTTAACGTTCTCGATGGTGTCTGCAGGCTCGACCTCCAAAGTGATGGTT 449760 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| || || | |||||| || Sbjct 449761 TTCCCAGTCAGGGTCTTCACGAATATCTGCATGTT 449795 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||||||||| |||||||| || || | ||||| | ||||| Sbjct 449353 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCC 449412 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| |||||||| ||||| | | || ||||| || |||| ||| || ||||| Sbjct 449413 TCCAACTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCT 449472 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || || ||||| ||| ||| || || || || || ||| Sbjct 449473 TGGATCTTGGCCTTCACATTCTCAATTGTGTCTGAGGCTTCCACTTCCAGGGTAATTGTC 449532 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || || || | |||||| Sbjct 449533 TTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 449564 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| || || |||||||| ||||| | || |||||||| |||||||| ||| Sbjct 448725 GCGAAGATGAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCTTTG 448784 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || || |||||||| || |||||| || |||||||| ||||||||||| ||||| Sbjct 448785 ACATTCTCAATGGTGTCTGAAGCTTCAACTTCCAGAGTGATGGTCTTTCCCGTCAGAGTT 448844 Query 211098 TTTACAAACACCTGCAT 211114 || || || | |||||| Sbjct 448845 TTCACGAAAATCTGCAT 448861 Score = 91.5 bits (100), Expect = 3e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || |||||||| ||||| ||||| || | | || | || ||||| || || Sbjct 447413 GTGAAGGGTTGACTCTTTCTGGATATTATAGTCAGACAATGTACGGCCGTCTTCTAGTTG 447472 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || ||||||||||| || || ||||| ||||| | || |||||||| |||||||| Sbjct 447473 TTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTT 447532 >seq1030 Length=27445 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || || || || |||||||| || || | ||||| | ||||| |||||||| Sbjct 2697 GTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCCAGCTG 2756 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || |||||||| || || || ||||| || || | || ||||||||||||||||| Sbjct 2757 TTTACCAGCGAAGATCAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTT 2816 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || |||||||||||||| || || ||||| || ||||| ||||| ||||| Sbjct 2817 GGCTTTGACATTTTCGATGGTGTCGGAAGCCTCCACCTCAAGGGTGATGGTCTTGCCCGT 2876 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || || | |||||| || Sbjct 2877 AAGGGTCTTCACGAAGATCTGCATATT 2903 >seq49 Length=1360277 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 || || || || || || | ||| ||||||||||||||||| ||| || || ||||| Sbjct 903035 CGCTGCTGATCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCTTTGACATTCTCGATA 903094 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109 || || ||| ||| ||||| || ||||| ||||| ||||| || || || || || | | Sbjct 903095 GTATCCGAGGGTTCGACCTCAAGGGTGATGGTCTTACCCGTTAGGGTTTTGACGAAGATC 903154 Query 211110 TGCAT 211114 ||||| Sbjct 903155 TGCAT 903159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159125356166810