Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq197 105 6e-18 seq1030 86.0 5e-12 >seq197 Length=620651 Score = 105 bits (116), Expect = 6e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCAT 39133 |||||| || || ||| |||||| || || || || |||| |||| || || |||| | Sbjct 449583 CACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAAG-GTGCGGCCGTCTT 449641 Query 39134 CAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCA 39193 ||||||| ||||| || || || |||||||||||||||| || | || |||||||||| Sbjct 449642 CAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCTTTGTCCT 449701 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||| || | || | | || || | ||| || |||| ||||| ||| Sbjct 449702 GGATCTTCGCCTTAACGTTCTCGATGGTGTCTGCAGGCTCGACCTCCAAAGTGATGGTTT 449761 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 | || ||||| || || || || || ||||| || || Sbjct 449762 TCCCAGTCAGGGTCTTCACGAATATCTGCATGTTGAC 449798 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTC 39128 ||||| ||||| || || ||| ||| ||||| || || || |||| |||| || || | Sbjct 446262 CGTAATACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAAG-GTGCGACC 446320 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || |||||||| || || || || |||||||||||||| | ||| | | ||| || Sbjct 446321 ATCCTCCAGCTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTT 446380 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| || || | || | | || || | || || |||| ||||| Sbjct 446381 GTCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCCGAAGCTTCAACTTCCAGAGTGAT 446440 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||||||| || || || || || ||||| Sbjct 446441 GGTCTTTCCCGTCAGAGTCTTCACGAAAATCTGCAT 446476 >seq1030 Length=27445 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGT-AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 |||||||| |||| | |||||||| || || || || || || || || || |||| Sbjct 2674 CCTCCTCT-AAGCCTCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGA 2732 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 || || || | || || |||||||| || || || || || ||||||||||| | ||| Sbjct 2733 CAGGGTACGGCCATCCTCCAGCTGTTTACCAGCGAAGATCAGTCGCTGCTGGTCCGGGGG 2792 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | | ||| |||||| ||| || ||||| | | | || ||| | |||||| Sbjct 2793 GATACCCTCCTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTGTCGGAAGCCTCCAC 2852 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || | ||||| | || ||||| || || || || ||||| ||||| || Sbjct 2853 CTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTCACGAAGATCTGCATATT 2903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429536208253922