Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq197 105 6e-18
seq1030 86.0 5e-12
>seq197
Length=620651
Score = 105 bits (116), Expect = 6e-18
Identities = 155/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCAT 39133
|||||| || || ||| |||||| || || || || |||| |||| || || |||| |
Sbjct 449583 CACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAAG-GTGCGGCCGTCTT 449641
Query 39134 CAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCA 39193
||||||| ||||| || || || |||||||||||||||| || | || ||||||||||
Sbjct 449642 CAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCTTTGTCCT 449701
Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| ||| || | || | | || || | ||| || |||| ||||| |||
Sbjct 449702 GGATCTTCGCCTTAACGTTCTCGATGGTGTCTGCAGGCTCGACCTCCAAAGTGATGGTTT 449761
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290
| || ||||| || || || || || ||||| || ||
Sbjct 449762 TCCCAGTCAGGGTCTTCACGAATATCTGCATGTTGAC 449798
Score = 86.0 bits (94), Expect = 5e-12
Identities = 150/216 (69%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTC 39128
||||| ||||| || || ||| ||| ||||| || || || |||| |||| || || |
Sbjct 446262 CGTAATACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAAG-GTGCGACC 446320
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
|| || |||||||| || || || || |||||||||||||| | ||| | | ||| ||
Sbjct 446321 ATCCTCCAGCTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTT 446380
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248
|||| ||| || || | || | | || || | || || |||| |||||
Sbjct 446381 GTCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCCGAAGCTTCAACTTCCAGAGTGAT 446440
Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| ||||||||||| || || || || || |||||
Sbjct 446441 GGTCTTTCCCGTCAGAGTCTTCACGAAAATCTGCAT 446476
>seq1030
Length=27445
Score = 86.0 bits (94), Expect = 5e-12
Identities = 159/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 39058 CCTCCTCTTAAGCGT-AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116
|||||||| |||| | |||||||| || || || || || || || || || ||||
Sbjct 2674 CCTCCTCT-AAGCCTCAACACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGA 2732
Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176
|| || || | || || |||||||| || || || || || ||||||||||| | |||
Sbjct 2733 CAGGGTACGGCCATCCTCCAGCTGTTTACCAGCGAAGATCAGTCGCTGCTGGTCCGGGGG 2792
Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236
| | ||| |||||| ||| || ||||| | | | || ||| | ||||||
Sbjct 2793 GATACCCTCCTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTGTCGGAAGCCTCCAC 2852
Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
|| | ||||| | || ||||| || || || || ||||| ||||| ||
Sbjct 2853 CTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTCACGAAGATCTGCATATT 2903
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429536208253922
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |