Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq1039 452 2e-122 >seq1039 Length=27060 Score = 452 bits (500), Expect = 2e-122 Identities = 674/948 (71%), Gaps = 10/948 (1%) Strand=Plus/Minus Query 78221 GCCATCAACTGGAACAAGGTCACCGACGAGGTCGACGACACCGTGTGGGATCGACTCACC 78280 ||| | |||||||||||| || |||||| || |||||| | || || ||| Sbjct 13189 GCCGTTAACTGGAACAAGATCCAGGACGAGAAAGATCTGGAAGTGTGGAACCGCCTGACC 13130 Query 78281 GGCAACTTCTGGTTGCCCGAGAAGGTACCGGTGTCCAACGACATCCCATCCTGGGACACC 78340 ||||||||||| |||| || ||||| ||| | |||||||| || || ||||| | ||| Sbjct 13129 AGCAACTTCTGGCTGCCGGAAAAGGTCCCGCTCTCCAACGATATTCCGGCCTGGCAAACC 13070 Query 78341 CTTACGCCGGAA-GAGAAGGAACTCACTATGCGTGTGTTCACCGGCCTCACCCTGCTCGA 78399 || | ||| | ||| || | || || || || || || |||||||| || ||||| || Sbjct 13069 CTGA-GCCACACCGAGCAGCAGCTAACGATCCGCGTCTTTACCGGCCTGACGCTGCTGGA 13011 Query 78400 CACCATCCAGGGCACAGTTGGCGCCATCTCGCTCATCGCCGACGCCAACACCCCGCACGA 78459 |||||| ||| || |||||||| | || || | ||||| || |||||||| Sbjct 13010 CACCATTCAGAATACCGTTGGCGCACCGGCTCTGATGGGTGACGCGCTGACGCCGCACGA 12951 Query 78460 GGAGGCGGTGCTCACCAACATCGCGTTCATGGAGTCGGTACACGCCAAGTCCTACAGCTC 78519 ||||||||| | | |||||| || |||||| |||| |||||| ||||||||||| Sbjct 12950 AGAGGCGGTGATGTCGAACATCAGCTTTATGGAGGCGGTGCACGCCCGCTCCTACAGCTC 12891 Query 78520 GATCTTCTCAACGCTATGCTCCTCCAAGCAGATTGACGAGGCGTTCCGTTGGTCGGAGGA 78579 ||| ||||| ||||| ||| |||| | | |||| ||| | | ||| || | Sbjct 12890 GATTTTCTCCACGCTGTGCCAGACCAAAGACGTGGACGCGGCCTACGCCTGGAGCGAAGC 12831 Query 78580 GAACGAGTACCTGCAGCGCAAGGCCCAGATCGTCCTGGACTACTACCGCGGCGACGACCC 78639 || ||||| | || | ||||| || | || ||| || || || | |||||| || Sbjct 12830 GAGCGAGTCGTTACAAAGAAAGGCGGAGCTGGTGCTGACGTATTATCGGGCCGACGAGCC 12771 Query 78640 CTTGAAGCGGAAGGTGGCCAGTACGCTCCTGGAGGGCTTCCTCTTCTACTCGGGCTTCTA 78699 ||||| |||| | ||||| | | ||||| ||||||||||| || ||||||| Sbjct 12770 GCTGAAGAAGAAGATCGCCAGCGTGTTTCTGGAATCATTCCTCTTCTATTCTGGCTTCTG 12711 Query 78700 CCTGCCGATGTACTGGTCGAGCCGCGCCAAGCTGACGAACACCGCGGACGTGATCCGGTT 78759 ||||| ||||||||||| ||||||| |||||| || |||||||| || |||| || | Sbjct 12710 GCTGCCCATGTACTGGTCAAGCCGCGGCAAGCTCACCAACACCGCCGATTTGATTCGCCT 12651 Query 78760 GATTATCCGAGACGAAGCAGTTCATGGGTACTACATCGGATACAAGTACCAGCGAGGCCT 78819 || ||||| || ||||| || || ||||| |||||||| || || || ||| ||| || Sbjct 12650 CATCATCCGGGATGAAGCGGTGCACGGGTATTACATCGGCTATAAATATCAGAAAGGGCT 12591 Query 78820 CGAGA--CCCAGGGGC-CGGCGCGGCAGGCTGAGCTCAAGGAGTACACGTTCGATCTGCT 78876 || | ||| | | ||| ||| || ||||| || | || || ||||| |||| Sbjct 12590 GGAAAAGGTCAGCGACGCGGAGCGCGAG---GAGCTTAAAGGGTTTGCGCTCGATTTGCT 12534 Query 78877 CTCGGAGCTCTACGACAACGAG-TGTGACTACACCGAGCAGCTCTATGACGACGTCGGAC 78935 ||| || |||||||||||| || | ||| |||||| | || || | || | ||| Sbjct 12533 GATGGATCTGTACGACAACGAGCTGAG-CTATACCGAGGAACTGTACGCCGGCACCGGCT 12475 Query 78936 TCACCGAGGATGTCAAGAAGTTCCTGCGCTACAACGGCAACAAGGCGCTGATGAACCTCG 78995 ||||| || || ||||| ||||||||| |||||||||||||||||| |||| Sbjct 12474 GGGAGGAGGACGTGAAAGCCTTCCTCTGCTACAACGCCAACAAGGCGCTGATGAATCTCG 12415 Query 78996 GCTACGAAGCACTGTTCCCCAAGGAAGAGACCATGGCAGACCCGGCCATCATGTCCGCGC 79055 ||||||| || |||||||| |||| | | || ||||||| || | ||||||| Sbjct 12414 GCTACGACGCGCTGTTCCCGCCGGAACTGGCGGAGGTTAACCCGGCGATTCTCTCCGCGC 12355 Query 79056 TCTCACCAGGCGGCGACGAGAACCACGACTTCTTCTCCGGGTCGGGCTCGAGCTACGTCA 79115 | || || || |||||| |||||||| ||||||||||||||||| ||| ||||| | Sbjct 12354 TGTCGCCCAACGCCGACGAAAACCACGATTTCTTCTCCGGGTCGGGTTCGTCGTACGTGA 12295 Query 79116 TCGGCAAAGCTGAAGCCACGGCAGATGAGGACTGGGACTTCTGATGAA 79163 | |||||||| | | || | |||||||||||||| || | ||||| Sbjct 12294 TGGGCAAAGCGGTGGAAACCGAGGATGAGGACTGGGATTTTTAATGAA 12247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299315055520292