Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq754 208 1e-48 >seq754 Length=71200 Score = 208 bits (230), Expect = 1e-48 Identities = 236/314 (75%), Gaps = 2/314 (1%) Strand=Plus/Plus Query 99138 GAGCAATCATGGAACAGTATCAAGATTTAATGACTCGCGTAATGAGCGAAGGCGTGCCGA 99197 ||| || |||| ||||||||| || || |||| || | || ||| ||||| Sbjct 66008 GAGGAACCATGAAACAGTATCTTGAATTGATGAAAAAAGTGCTCGATGAGGGCACGCCGA 66067 Query 99198 AGAAAGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATC 99257 | || |||||||| || |||||||| || || ||||| || ||||||||||| |||||| Sbjct 66068 AAAACGACCGTACCGGCACCGGTACGCTCTCCATTTTTGGCCACCAGATGCGCTTCAATT 66127 Query 99258 TGCAAGAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGTTCGATTATTCACG 99317 | || |||||||| || ||||| |||||||||||||| || |||| ||||| ||||| | Sbjct 66128 TACAGGAAGGCTTCCCTCTGGTGACGACTAAGCGCTGCCATCTGCGCTCGATCATTCATG 66187 Query 99318 AACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAA 99377 ||||||| ||||||||| ||||||||||||| || ||| | | || || || Sbjct 66188 AACTGCTCTGGTTCCTGCAAGGCGATACCAACGTTGCGTATCTGCACGAAAACAACGTCT 66247 Query 99378 CTATTTGGGACGAAT-GGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAG 99436 | || |||||||||| || ||| ||| | ||| |||| || ||||| ||||| || ||| Sbjct 66248 CCATCTGGGACGAATGGGCAGATGAAA-ACGGCAACCTGGGCCCGGTTTACGGCAAGCAG 66306 Query 99437 TGGCGGTCTTGGCC 99450 ||||| | ||||| Sbjct 66307 TGGCGCGCATGGCC 66320 Score = 149 bits (164), Expect = 9e-31 Identities = 232/332 (70%), Gaps = 0/332 (0%) Strand=Plus/Plus Query 99843 CTGACCGTCAGTTATCGTGTCAGCTTTATCAACGCAGCGCCGATGTGTTCTTAGGGGTGC 99902 ||||| | || | || || ||||| || || || | ||||||||| | || ||| Sbjct 66479 CTGACGGAAAGCTCTCCTGCCAGCTCTACCAGCGTTCCTGTGATGTGTTCCTCGGCCTGC 66538 Query 99903 CGTTTAATATTGCGTCATACGCTTTGTTGATCCACATGTTTGCACAGCAGGCTAACATGA 99962 ||||||| ||||| || || |||| |||| ||| | || |||||| | || || Sbjct 66539 CGTTTAACATTGCCAGCTATGCGCTGTTAGTCCATATGATGGCGCAGCAGTGTGACCTGG 66598 Query 99963 CCGTGGGTGATTTCGTCTGGTCTGGTGGTGACGTACATCTGTACAATAACCATCTGGAAC 100022 ||||| ||||| |||||| | ||||| ||| ||||| |||| |||||| |||| | Sbjct 66599 AAGTGGGGGATTTTGTCTGGACCGGTGGGGACACCCATCTCTACAGCAACCATATGGAGC 66658 Query 100023 AAACCCGTACCCAGTTAGGTCGTGCCCCGCGTCCGTTACCTAAGCTGATTATCAAACGTA 100082 | |||| | |||| | || | ||||| || | || ||||| || ||||| || | Sbjct 66659 AGACCCATCTCCAGCTGACCCGCGAACCGCGCGCGCTGCCGAAGCTCATCATCAAGCGCA 66718 Query 100083 AGCCAGACTCCATCTTCGAATATAAGTTTGAAGACTTCGAACTTGAAGGCTACGACCCGC 100142 | || | || ||||| || || || || || || || |||| ||||||||||||| Sbjct 66719 AACCGGCGTCAATCTTTGACTACCGCTTCGATGATTTTGAGATTGAGGGCTACGACCCGC 66778 Query 100143 ATCCTGCAATCAAAGCACCGGTCGCGATATGA 100174 | |||| |||||||| || ||||| || ||| Sbjct 66779 ACCCTGGCATCAAAGCGCCCGTCGCTATCTGA 66810 Score = 105 bits (116), Expect = 1e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 99569 CAGATCGACCAAATCTCCAAGGCCATGGACCAGTTGAAAAACGACCCGGATAACCGTCGT 99628 || || ||||| ||| ||| | ||| ||||| |||||||||| || || || || Sbjct 66337 CATATTGACCAGATCACCACCGTGATGAACCAGCTGAAAAACGATCCAGACTCGCGCCGA 66396 Query 99629 ATCATCGTGTCGGCATGGAACGTAGCTGACCTCGACGAAATGGCTTTAGCACCGTGCCAC 99688 ||||| || || || |||||||| | || || ||| ||||||| | |||||||||||| Sbjct 66397 ATCATTGTTTCCGCCTGGAACGTCGGCGAGCTGGACAAAATGGCGCTGGCACCGTGCCAC 66456 Query 99689 GCATTCTTCCAGTTCTAC 99706 || ||||||||||||||| Sbjct 66457 GCGTTCTTCCAGTTCTAC 66474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716447933294800