Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq754 127 3e-24 >seq754 Length=71200 Score = 127 bits (140), Expect = 3e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 202543 AAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGAC 202602 || || ||||||||||||||||| |||| |||| | || || ||||||||| || | Sbjct 66067 AAAAACGACCGTACCGGCACCGGTACGCTCTCCATTTTTGGCCACCAGATGCGCTTCAAT 66126 Query 202603 CTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCAC 202662 | ||||||||||| |||||||| || || || || || || |||||||| Sbjct 66127 TTACAGGAAGGCTTCCCTCTGGTGACGACTAAGCGCTGCCATCTGCGCTCGATCATTCAT 66186 Query 202663 GAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTC 202722 || ||||| ||||||||| |||| || |||||| | || ||| |||| ||| ||| Sbjct 66187 GAACTGCTCTGGTTCCTGCAAGGCGATACCAACGTTGCGTATCTGCACGAAAACAACGTC 66246 Query 202723 ACTATCTGGGACGAATGGGC 202742 | ||||||||||||||||| Sbjct 66247 TCCATCTGGGACGAATGGGC 66266 Score = 116 bits (128), Expect = 6e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 202954 GGCGAACTCGGCCCAGTATACGGAAAACAGTGGCGGGATTGGGTTGGTGCAGATGGTCGG 203013 ||| | || ||||| || ||||| || |||||||| | ||| | ||||| || Sbjct 66277 GGCAACCTGGGCCCGGTTTACGGCAAGCAGTGGCGCGCATGGCCAACGCCTGATGGCCGC 66336 Query 203014 CATCATGACCAAATCACCAAAGTCATCGACCAGCTGCGTAACGATCCGGATAACCGCCGC 203073 ||| |||||| ||||||| || || |||||||| |||||||| || ||||| Sbjct 66337 CATATTGACCAGATCACCACCGTGATGAACCAGCTGAAAAACGATCCAGACTCGCGCCGA 66396 Query 203074 ATTATTGTCAGCGCATGGAATGTCGGTGAGTTGGACCAGATGGCGTTAGCACCGTGTCAT 203133 || ||||| ||| ||||| ||||| ||| ||||| | |||||| | |||||||| || Sbjct 66397 ATCATTGTTTCCGCCTGGAACGTCGGCGAGCTGGACAAAATGGCGCTGGCACCGTGCCAC 66456 Query 203134 TCTTTCTTCCAGTTCTA 203150 | |||||||||||||| Sbjct 66457 GCGTTCTTCCAGTTCTA 66473 Score = 116 bits (128), Expect = 6e-21 Identities = 198/287 (69%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 203320 GATGTCTTCTTAGGCGTGCCGTTTAACATCGCCTCGTATGCTTTACTGACTGAGATGGTT 203379 ||||| ||| | ||| ||||||||||||| ||| ||||| | | | ||| | Sbjct 66520 GATGTGTTCCTCGGCCTGCCGTTTAACATTGCCAGCTATGCGCTGTTAGTCCATATGATG 66579 Query 203380 GCTCAGCAGGTCAACATGGTGGCCGAGGAGTTCGTCTGGACAGGCGGTGATACACATCTG 203439 || |||||| || ||| | | ||| || |||||||| || || || || ||||| Sbjct 66580 GCGCAGCAGTGTGACCTGGAAGTGGGGGATTTTGTCTGGACCGGTGGGGACACCCATCTC 66639 Query 203440 TATTCCAACCATCTGGAGCAGGCCCGTCTGCAGTTAACTCGTGACCCGCACCCATTACCG 203499 || ||||||| |||||||| ||| ||| ||| | || || || |||| | | | ||| Sbjct 66640 TACAGCAACCATATGGAGCAGACCCATCTCCAGCTGACCCGCGAACCGCGCGCGCTGCCG 66699 Query 203500 CGTCTGAAATTCAAACGTAAGCCCGAGTCTATCTTCGACTACCAGTTCGAAGACTTTGAA 203559 || | |||| || || || | ||| ||||| ||||||| ||||| || ||||| Sbjct 66700 AAGCTCATCATCAAGCGCAAACCGGCGTCAATCTTTGACTACCGCTTCGATGATTTTGAG 66759 Query 203560 ATCGAAGGCTACGTTTCCCACGACGCCATCAAAGCACCGGTTGCCAT 203606 || || ||||||| | ||| | ||||||||| || || || || Sbjct 66760 ATTGAGGGCTACGACCCGCACCCTGGCATCAAAGCGCCCGTCGCTAT 66806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788302321924000