Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_031017.1 Length=32409 Score E Sequences producing significant alignments: (Bits) Value seq1367 425 1e-114 >seq1367 Length=8089 Score = 425 bits (470), Expect = 1e-114 Identities = 406/520 (78%), Gaps = 0/520 (0%) Strand=Plus/Plus Query 28673 AATGAGTTTAGATAATTTCAAAAAGCAAACTATTACATGGGATATGATTAACCAGGCATT 28732 |||||||||||||||||| ||||| | | ||| |||||||| | | || | | || Sbjct 6065 AATGAGTTTAGATAATTTTAAAAATAGAGCGATTGTATGGGATACGGTCAATAAAGGCTT 6124 Query 28733 TGAACAGCCCATTCAAATTATGGAGGGAGATGTCAATGCAAGAACGATACTTCTTAAGAT 28792 ||| || |||||||| ||| | || || ||||| || ||||| | |||| || Sbjct 6125 CCCACAACCAATTCAAATAATGCAAGGCGACGTCAACGCTAGAACATTGTCAATTAAAAT 6184 Query 28793 AACTGATAATGGTTCTGTACTTGACTTAACAGGTTATTCAGTAAAATTAACCTATCAATA 28852 | ||||||||| | | |||| || || ||| ||||| ||||| | || |||||||| Sbjct 6185 ACTTGATAATGGAGGCGAAATTGATTTGACTGGTCATTCATTAAAACTTACATATCAATA 6244 Query 28853 TATGTATAAATCTCAATCAGGTTTTATTATGTTAACTCCTAATGATATATCCAAGGGAGA 28912 || ||| | | ||||||||| ||||| | ||||| | | || | |||||||| Sbjct 6245 TACTAATAGCAGTAATTCAGGTTTTGTTATGATTCCTCCTGAAAACTTAACTAAGGGAGA 6304 Query 28913 ATTCACGCTTATAATTCCTACTGAGATGACAGTATCAGGATTAATAAAATCAAATTTAAT 28972 || | | |||||||||| || ||||||| | | ||| | || || | || ||||| Sbjct 6305 GTTTATTTTAGTAATTCCTACCGAAATGACAGAAACTGGAGTTATTGAAGCGAACTTAAT 6364 Query 28973 ACTCCTCAATGAAGATAAAGAACAAGTTATTGTCAGTAAGAATTTAACATTTATATCAGA 29032 ||| ||||||||||||||||| || ||||| ||||| ||||| | || ||||||||||| Sbjct 6365 ACTTCTCAATGAAGATAAAGAGCAGGTTATCGTCAGCAAGAACCTTACGTTTATATCAGA 6424 Query 29033 TGATTCTACAGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGATTTTACAAA 29092 | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6425 TAATTCTACGGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGATTTTACAAA 6484 Query 29093 ATTATTATTGGGGAAAATGCCACAAGTGTTGCGTAGTGAGTTGAATGACTTACACGCTCA 29152 ||||||||||| || ||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 6485 ATTATTATTGGAAAATATGCCACAAGTAATGCGTAGTGAGTTGAATGACTTACATGCTCA 6544 Query 29153 AACTGAATCAAATACAAGCAACATCGAGCTTAAAGCAAAT 29192 |||||||||||| | ||||| || ||||||||||| ||| Sbjct 6545 AACTGAATCAAACAAGAGCAATATTGAGCTTAAAGCCAAT 6584 Score = 145 bits (160), Expect = 2e-30 Identities = 97/108 (90%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 29565 TTAATCACAAATCAAAATGTGACAACTGCTCAAACAACAGCAAATCAAGCTAAAACTGAT 29624 |||||||||||||||||||| |||||||||||| ||||||||| |||||| ||| ||| Sbjct 6666 TTAATCACAAATCAAAATGTAACAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAA 6725 Query 29625 GCCCAAGCTGCAATGACAAAGGCTACCGAAGCACAAGCGAACAGTTTA 29672 ||| || ||||||| |||||||||||||||||||||||||||||||| Sbjct 6726 GCCAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCGAACAGTTTA 6773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103584993204188