Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_031019.1 Length=41809 Score E Sequences producing significant alignments: (Bits) Value seq986 820 0.0 seq997 156 1e-33 seq1102 98.7 3e-16 >seq986 Length=30461 Score = 820 bits (908), Expect = 0.0 Identities = 982/1331 (74%), Gaps = 2/1331 (0%) Strand=Plus/Plus Query 29095 TTACGCTTTAATATGTATTTAGGCCGCTGTTTGGTTTCTATGTAAATTCTACCAATATAT 29154 |||| |||||| | ||| |||||| ||| |||| || ||||| || ||||| || Sbjct 11744 TTACCCTTTAACAGGTAGCGAGGCCGTCCCTTGCTTTCGATATAAATCCTTCCAATGTAC 11803 Query 29155 TCTCCAAGAATACCTATTCCTATCAATTGAACGCCACCCAGGAAAAGAACAGAAACAAGA 29214 ||||| || | ||| || || || | ||| || ||||| |||||||| | || ||||| Sbjct 11804 TCTCCGAGCACACCAATGCCGATAAGTTGCACACCACCAAGGAAAAGGATGGAGACAAGT 11863 Query 29215 AGAGACGGGTAGCCAGGAACATTATTTCCAAATATTAATTTATCAATAATCATCCATGCA 29274 | ||||| |||||| | ||| ||| ||||| | | || | |||||||||||| Sbjct 11864 AATGACGGATAGCCACGCACAGCATTGCCAAAAGCCAGAGTGTCTACAATCATCCATGCG 11923 Query 29275 CCGTAAAGGAATGACATACCTGCAATAAACAATCCAATGTAAGTCCATATGCGGAGCGGA 29334 || || || |||| | |||||||| || | || || || ||||| ||||| || || Sbjct 11924 CCATAGAGAAATGCGAGACCTGCAACAACAAGCCCGATATAGGTCCACATGCGCAGAGGG 11983 Query 29335 AATGTTGAGAAAGAAGTTATTCCCTCCAGCGCCAGGTTCCATAATTTCCAGCCGTTGAAT 29394 || || |||||| || || ||||| || || ||||||||||| ||||| || || ||| Sbjct 11984 AAGGTAGAGAAACTGGTGATACCCTCAAGAGCAAGGTTCCATAACTTCCAACCATTAAAT 12043 Query 29395 TTCGAATCACCGGCCACGCGTTCGGCACGGGCATATTTAACAACATCCGTTTTTCCGCCA 29454 || | | || || |||||||| || |||||||||| |||||||||||| || ||| Sbjct 12044 TTTGTACTGCCTGCAACGCGTTCAGCGCGGGCATATTCAACAACATCCGTGCGACCACCA 12103 Query 29455 ACCCAACTGAGCACACCCTTCATAAACAAGTTGCGTTCTGGCATTTGTTTGATGTTCTCG 29514 ||||| || || || |||||||| || | ||| | |||||||| | |||||||| ||| Sbjct 12104 ACCCAGCTCAGAACTCCCTTCATGAAGAGGTTTCTCTCTGGCATGAGCTTGATGTTTTCG 12163 Query 29515 ACAACCGCACGGCTCATTAACCGAAAGTCGCCAACATTTTCTTCGATTTTTGGATTGCTG 29574 || ||| ||||| ||| | || || || || |||||||| ||||| | || || ||| Sbjct 12164 ACCACCTCACGGGACATCAGACGGAAATCACCGACATTTTCCTCGATCTGCGGGTTACTG 12223 Query 29575 ATTTTATTGTGCAGCTTATAAAACCACTCAGCTGTCTTACGCTTCATGCGCCCGTCAGTT 29634 ||||| ||||||| |||||| |||||||| || | ||||| |||| || | ||||| Sbjct 12224 ATTTTGTTGTGCAACTTATAGAACCACTCGGCAGATTTACGTTTCAGACGACTATCAGTG 12283 Query 29635 GAGCGGTCTGAGCGCTTAGCCAGCACCATATCCGCGCCAGCCTGCCACTTCTCAATGAGA 29694 |||||||| |||||||| ||||| ||||| || || || |||||||| ||||| || ||| Sbjct 12284 GAGCGGTCAGAGCGCTTGGCCAGTACCATGTCGGCCCCGGCCTGCCATTTCTCTATCAGA 12343 Query 29695 TGAGGGATAACTTCTATCGGATCCTGTAAATCGACATCAATAGGAATGACCGCATCCCCG 29754 || || || || || || || ||||| || || || ||||| || || | || || || Sbjct 12344 TGCGGAATGACCTCAATTGGGTCCTGCAAGTCTACGTCAATCGGGATAATTGCTTCACCT 12403 Query 29755 GTTGCATGGTCGAGACCCGCGAAAAGAGCAGGTTCTTTACCGAAGTTTCGCGTAAACGAA 29814 || || ||||| || || ||||| | |||||| ||||| || ||||| || || || ||| Sbjct 12404 GTAGCGTGGTCTAGGCCGGCGAATAAAGCAGGCTCTTTTCCAAAGTTGCGGGTGAAGGAA 12463 Query 29815 AGCGGAATAACGAGCGGATCAGATGCAGCTATTTTGTTAATTATTGATTCAGTCGCATCT 29874 || |||| || |||||||| | ||| | ||| || |||||||| ||||||||| Sbjct 12464 AGAGGAACCACAAGCGGATCTGCAATAGCAAGCGCGTTTATAATTGATTCGGTCGCATCT 12523 Query 29875 TTACTACCATCATTAATAAAAACGATCTCAATTTCATATTCTTTTAGCTCATTAAACTCA 29934 || ||||| ||||| || || || ||||||| ||| | | |||| | | | |||||| Sbjct 12524 TTGCTACCGTCATTGATGAAGACTATCTCAACTTCCTGCTGCTTTAACCCTTCAAACTCC 12583 Query 29935 CGTACCGTTTTATAGAAAATCGGTATCGTGTCTTCTTCGTTAAAAACTGGAACGACAAGA 29994 || || | ||| ||||| || || || | || ||||| ||||| || |||||||| ||| Sbjct 12584 CGCACGGCTTTGTAGAAGATTGGAATTGCTTCCTCTTCATTAAACACCGGAACGACCAGA 12643 Query 29995 GAGATTTTCATCTTATATCCCTGAAAACAATGAATCTGGAATAGATAAAGCCGCATACCA 30054 || |||||||| | |||||| || |||||||| | |||||||| |||||||| |||| Sbjct 12644 GAAATTTTCATTTCGCATCCCTAAAGACAATGAACTTTGAATAGATGAAGCCGCACACCA 12703 Query 30055 GGCTAATTGCCGAGAAAGTGATAAGGGTAATCAATGGTGGCAAG-GAACATTGGTCAGCC 30113 | || || || |||||| ||| | ||||| ||| | |||||| ||| |||||| Sbjct 12704 GACTGATGGCGGAGAAAACGATTAACGTAAT-AATCGGGGCAAGCCCTGATTTGTCAGCA 12762 Query 30114 ATCCAGCCAACAACAGCGCTCAGTGTTCCCATGAATCCCACATACATCATGTAGCGAAGC 30173 ||| ||||| | |||||||| || ||||| || || ||||||| ||||||||| | Sbjct 12763 CACCAACCAACGGCGGCGCTCAGCGTACCCATAAACCCTACATACAGCATGTAGCGCATG 12822 Query 30174 GTGGTGGTGGTGGCATTAAAGGTGAAACGCGCATTGGCATAGAAGCTGAACGATACGGCG 30233 || || || | | ||||||||||| | || || || | ||||| || || || || Sbjct 12823 GTCGTTGTAGAAGACTTAAAGGTGAACCTGGCGTTTGCGAAAAAGCTAAATGACACCGCA 12882 Query 30234 ATAACAAAACCGGAAAAGTTCGCCAGCGCCTGATGCGTATGCATCCCATACACACAAAAA 30293 | ||||| |||| ||||| ||||| || || || || | | || | | ||| Sbjct 12883 ACTACAAATCCGGCGAAGTTAGCCAGAGCTTGCCCTGTGTGGAAGACGTAAATAGAAATG 12942 Query 30294 GCAAATACGCCCCAATGAATAAGCGTGTTAAGAACACCGATCGATGTGTACTTAGCGAAT 30353 || || || |||| ||||| |||||||| | |||||| || ||||||||| | |||||| Sbjct 12943 GCGAACACAACCCAGTGAATGAGCGTGTTGATAACACCTATTGATGTGTACCTGGCGAAT 13002 Query 30354 AACTTCAACATTATGAAAATCAGCGGATTCGGAAAGGTCTGAAGTGTAGCACTACAAATT 30413 ||||| |||||||| ||||||| | ||||||||||||||||||||||||| ||| || Sbjct 13003 AACTTTAACATTATAGAAATCAGTGAATTCGGAAAGGTCTGAAGTGTAGCATCACACATG 13062 Query 30414 GTTTTGATCGA 30424 |||||||| Sbjct 13063 CACTTGATCGA 13073 >seq997 Length=29618 Score = 156 bits (172), Expect = 1e-33 Identities = 297/439 (68%), Gaps = 25/439 (6%) Strand=Plus/Minus Query 6689 TGCGTCTGTCATTATCTGCATCATCGTCTGTCTTTCGTGGGCTGTTAATCATTATCGTGA 6748 |||| ||||| |||||||| | | |||| | | | ||||| |||| || ||||| || Sbjct 18230 TGCG-CTGTCGTTATCTGCCTGCTGGTCTTTATGGCTTGGGCGATTAACCACTATCGCGA 18172 Query 6749 TAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCCACA-------TCA---------- 6791 |||||||||||||||||||||||||||||||||||||| ||| Sbjct 18171 CAACGCCATCACCTACAAAGAGCAGCGCGATAAAGCCACTGAGAAACTCAGCCAGGCCAA 18112 Query 6792 ----ATCATCGCTGATATGCAGAAGCGTCAACGAGATGTAGCAGAACTCGATGCCAGATA 6847 | |||| || ||||||| || || || |||| || | || ||||||| ||| Sbjct 18111 CGCCACCATCAAAGACATGCAGACCCGCCAGCGTGATGCCGCTGCGCTGGATGCCAAATA 18052 Query 6848 CACAAAGGAGCTTGCTGATGCTAACGCGACTATCGAAACTCTCCGCGCTGATGTTTCTGC 6907 ||| || | |||||||| || | | || || ||| | ||||| ||| Sbjct 18051 CACTGGAGAACCGGCTGATGCGAAAGATATCATTGAGCGTCTGCATAGCGATGTCATTGC 17992 Query 6908 TGGGCGTAAGCGCCTGCAAGTCTCCGCCACCTGTCCA---AAGTCAACGACCGGAGCCAG 6964 ||| |||||||| ||||| || ||| | |||||| || | ||||||| || | Sbjct 17991 TGGCCGTAAGCGGCTGCAGCTCAACGCAAACTGTCCCGCGAACGGAGCGACCGGCACCGG 17932 Query 6965 CGGCATGGGCGATGGAGAAAGCCCAAGACTTACAGCAGATGCTGAACTCAATTATTACCG 7024 |||||||||||||| |||| |||||||| | ||||||| |||||| | Sbjct 17931 CGGCATGGGCGATGCTTCCGGCCCCAGACTTACTGACTCCGCTGAACGGGATTATTTCAT 17872 Query 7025 TCTCCGAAGTGGAATCGACAGGATAACCGCGCAGGTTAACTACCTGCAGGAGTACATCAG 7084 ||| ||| |||||| || | || |||||| ||| |||||| | ||||| || Sbjct 17871 CCTCAGAAAGCGAATCGTCACAGTGACGAAGCAGGTCGGCTATCTGCAGAACTACATAAG 17812 Query 7085 GAGTCAGTGCTTAAAATAA 7103 | |||||||||||||||| Sbjct 17811 CACTCAGTGCTTAAAATAA 17793 >seq1102 Length=22075 Score = 98.7 bits (108), Expect = 3e-16 Identities = 62/67 (93%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 30653 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAATCAAATAC 30712 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 2274 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATCTAAATCAATAAG 2215 Query 30713 TTATGTA 30719 ||||||| Sbjct 2214 TTATGTA 2208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133664352387388