Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq637 170 2e-37 seq236 136 4e-27 seq952 114 1e-20 seq955 109 6e-19 seq895 98.7 1e-15 >seq637 Length=122170 Score = 170 bits (188), Expect = 2e-37 Identities = 148/184 (80%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 52708 TACATAGCTTCAGTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGAG 52767 ||||| | | ||| || ||||| | || || || |||| |||||||| ||||||||| Sbjct 107107 TACATGGACTGAGTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGAG 107166 Query 52768 TTAAAGCGAACAGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCT 52827 ||||| || || || || ||||| |||||||| |||| ||| || ||||| ||| | | Sbjct 107167 TTAAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATGT 107226 Query 52828 TCCATCGCTTCAAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACCGCCT 52887 |||||||| || |||| ||||||||| ||||||||||| ||||||||||||||||| ||| Sbjct 107227 TCCATCGCATCGAGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTGCTGACCACCT 107286 Query 52888 TCGA 52891 |||| Sbjct 107287 TCGA 107290 >seq236 Length=545527 Score = 136 bits (150), Expect = 4e-27 Identities = 138/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 52716 TTCAGTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGAGTTAAAGCG 52775 ||||||||| ||||| | || || || ||||| |||||| |||||| ||||| ||||| Sbjct 30886 TTCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTCAGAGAGTTGAAGCG 30827 Query 52776 AACAGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCTTCCATCGC 52835 || ||||||||||| || || || |||| ||| ||||||||| |||| || | ||| Sbjct 30826 TACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCTGGGTGCTCAACCGC 30767 Query 52836 TTCAAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACCGCCTTCGACACG 52895 || | || | |||| || || |||||| ||||| ||||||||||| ||||| || || Sbjct 30766 GTCCATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGACCACCTTCCACGCG 30707 >seq952 Length=33737 Score = 114 bits (126), Expect = 1e-20 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 66395 AAATAAAATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTG 66454 |||| ||||||||| |||| ||||||||||||| |||||||||||||||||||||||| Sbjct 12059 AAATGAAATGGCACGCCCTGTAGGATTCGAACCTACGACCTACGGCTTAGAAGGCCGTTG 12118 Query 66455 CTCTATCCAGCTGAGCTAAGAGTGCA 66480 ||||||||| |||||||||| | ||| Sbjct 12119 CTCTATCCAACTGAGCTAAGGGCGCA 12144 >seq955 Length=33606 Score = 109 bits (120), Expect = 6e-19 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 66401 AATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTAT 66460 |||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1426 AATGGCACGCCCTGTAGGATTCGAACCTACGACCTACGGCTTAGAAGGCCGTTGCTCTAT 1485 Query 66461 CCAGCTGAGCTAAGAGTGCA 66480 ||| |||||||||| | ||| Sbjct 1486 CCAACTGAGCTAAGGGCGCA 1505 >seq895 Length=39754 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 52708 TACATAGCTTCAGTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGAG 52767 || |||| || ||||| || || ||||| ||||| |||| || || ||||||| Sbjct 11868 TAGATAGATTGGGTAAACGTTCGCGAAATCACATCCTGCTGCTGCTCGCGCGTCAGGGCA 11927 Query 52768 TTAAAGCGAACAGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCT 52827 ||||| || || ||||| || || || ||||| |||| | ||||| || || | Sbjct 11928 TTAAACCGCACCGCATAGCCCGAGACGCGGATGGTCAGGTTCGGGTAGTTCTCGGGATGC 11987 Query 52828 TCCATCGCTTCAAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACCGCCT 52887 | || || || || | ||| || || ||||| |||||||||||||||||||| ||||| Sbjct 11988 GCAATGGCATCGAGGAGCATCTCCCGGTTCATCACGTTAACGTTCAGGTGCTGCCCGCCC 12047 Query 52888 TC 52889 || Sbjct 12048 TC 12049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522103491566640