Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_031020.1
Length=163201
Score E
Sequences producing significant alignments: (Bits) Value
seq637 170 2e-37
seq236 136 4e-27
seq952 114 1e-20
seq955 109 6e-19
seq895 98.7 1e-15
>seq637
Length=122170
Score = 170 bits (188), Expect = 2e-37
Identities = 148/184 (80%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 52708 TACATAGCTTCAGTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGAG 52767
||||| | | ||| || ||||| | || || || |||| |||||||| |||||||||
Sbjct 107107 TACATGGACTGAGTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGAG 107166
Query 52768 TTAAAGCGAACAGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCT 52827
||||| || || || || ||||| |||||||| |||| ||| || ||||| ||| | |
Sbjct 107167 TTAAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATGT 107226
Query 52828 TCCATCGCTTCAAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACCGCCT 52887
|||||||| || |||| ||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 107227 TCCATCGCATCGAGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTGCTGACCACCT 107286
Query 52888 TCGA 52891
||||
Sbjct 107287 TCGA 107290
>seq236
Length=545527
Score = 136 bits (150), Expect = 4e-27
Identities = 138/180 (77%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 52716 TTCAGTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGAGTTAAAGCG 52775
||||||||| ||||| | || || || ||||| |||||| |||||| ||||| |||||
Sbjct 30886 TTCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTCAGAGAGTTGAAGCG 30827
Query 52776 AACAGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCTTCCATCGC 52835
|| ||||||||||| || || || |||| ||| ||||||||| |||| || | |||
Sbjct 30826 TACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCTGGGTGCTCAACCGC 30767
Query 52836 TTCAAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACCGCCTTCGACACG 52895
|| | || | |||| || || |||||| ||||| ||||||||||| ||||| || ||
Sbjct 30766 GTCCATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGACCACCTTCCACGCG 30707
>seq952
Length=33737
Score = 114 bits (126), Expect = 1e-20
Identities = 77/86 (90%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 66395 AAATAAAATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTG 66454
|||| ||||||||| |||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 12059 AAATGAAATGGCACGCCCTGTAGGATTCGAACCTACGACCTACGGCTTAGAAGGCCGTTG 12118
Query 66455 CTCTATCCAGCTGAGCTAAGAGTGCA 66480
||||||||| |||||||||| | |||
Sbjct 12119 CTCTATCCAACTGAGCTAAGGGCGCA 12144
>seq955
Length=33606
Score = 109 bits (120), Expect = 6e-19
Identities = 72/80 (90%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 66401 AATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTAT 66460
|||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1426 AATGGCACGCCCTGTAGGATTCGAACCTACGACCTACGGCTTAGAAGGCCGTTGCTCTAT 1485
Query 66461 CCAGCTGAGCTAAGAGTGCA 66480
||| |||||||||| | |||
Sbjct 1486 CCAACTGAGCTAAGGGCGCA 1505
>seq895
Length=39754
Score = 98.7 bits (108), Expect = 1e-15
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 52708 TACATAGCTTCAGTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGAG 52767
|| |||| || ||||| || || ||||| ||||| |||| || || |||||||
Sbjct 11868 TAGATAGATTGGGTAAACGTTCGCGAAATCACATCCTGCTGCTGCTCGCGCGTCAGGGCA 11927
Query 52768 TTAAAGCGAACAGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCT 52827
||||| || || ||||| || || || ||||| |||| | ||||| || || |
Sbjct 11928 TTAAACCGCACCGCATAGCCCGAGACGCGGATGGTCAGGTTCGGGTAGTTCTCGGGATGC 11987
Query 52828 TCCATCGCTTCAAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACCGCCT 52887
| || || || || | ||| || || ||||| |||||||||||||||||||| |||||
Sbjct 11988 GCAATGGCATCGAGGAGCATCTCCCGGTTCATCACGTTAACGTTCAGGTGCTGCCCGCCC 12047
Query 52888 TC 52889
||
Sbjct 12048 TC 12049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 522103491566640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |