Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_031030.1 Length=170788 Score E Sequences producing significant alignments: (Bits) Value seq236 134 2e-26 seq637 116 4e-21 seq995 86.0 7e-12 >seq236 Length=545527 Score = 134 bits (148), Expect = 2e-26 Identities = 109/132 (83%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 60709 TTACAAACTCTTGGTGAATGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 60768 ||||| || | || || ||||| ||||||||||||||||||||||| || |||||||| Sbjct 30895 TTACAGGCTTTCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTCAGAGA 30836 Query 60769 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 60828 ||| ||||| || |||||||| || || || |||||||||||||| |||||||| || || Sbjct 30835 GTTGAAGCGTACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCTGGGTG 30776 Query 60829 CTTAACTGCATC 60840 || ||| || || Sbjct 30775 CTCAACCGCGTC 30764 >seq637 Length=122170 Score = 116 bits (128), Expect = 4e-21 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 60722 GTGAATGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 60781 ||||| ||||| | ||||||||| |||||||||| |||||| |||||||| || ||| Sbjct 107119 GTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGAGTTAAAACGTACT 107178 Query 60782 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 60828 || || || |||||||||||||||||||| |||||||| || ||||| Sbjct 107179 GCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATG 107225 >seq995 Length=29666 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/99 (81%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 68826 TGCATGGATTCGAACCATGGACCAATTGATTAACAGTCAACTGCTCTACC-ACTGAGCTA 68884 |||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||| Sbjct 22104 TGCA-GGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTA 22162 Query 68885 CACATCCAAATTGGTGGGGAGTGATGGAGTCGAACCACC 68923 | || || ||||||| ||| || ||||||| || Sbjct 22163 ACGACCCGAAATGGTGGGCGATGACGGGCTCGAACCGCC 22201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546381347123520