Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq486 390 2e-103 seq65 91.5 2e-13 >seq486 Length=217039 Score = 390 bits (432), Expect = 2e-103 Identities = 1034/1576 (66%), Gaps = 26/1576 (2%) Strand=Plus/Plus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || || || ||||||| ||| ||||| ||||| || | |||| |||| | |||||| Sbjct 174786 GCAGGCTTAGTACGTAAATAATACATTCCAGTCTTCAAGCCCATTTTCCACGCATAGAAA 174845 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 || || ||||| ||| ||| | || || |||| ||| || || | || ||||| Sbjct 174846 TGAATCGATGTCAATTTTCCATAGTTTGGTTCTGCTACATGGATGTTAAATGATTGACTC 174905 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 || || |||||||| || | ||| || ||||||| || ||||||| || || ||| Sbjct 174906 TGGTCAATGAAAGCACCACGATCCGCGGCCATTTGGATTGTGGTCTTCACAGATATCTCC 174965 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTATTT---TGAATGGAA 77039 || | ||| ||| ||| | | | || || | |||| || | | |||||||| Sbjct 174966 CACACAGTCTTGTAAAGATCTCTTATTTCTTTGGGAATACTTTCAATAGACTGAATGGAT 175025 Query 77040 CCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAA 77099 ||| | |||||| ||| || |||||||||| ||| || | ||| || | | Sbjct 175026 CCATTGTTGTGTATAATGAGATTTTTCATATCATCATCCCATAAATCAGCCTCGGTGAGA 175085 Query 77100 ACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 77159 | | ||| || ||| | || || | || ||||||||||| | ||||| | |||| Sbjct 175086 TCGCGAAGCAGGTGATGGTTGACCACCTGGAATTCTCCAGAAAGAACTCTTCTTTGGTAA 175145 Query 77160 ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCA 77219 || || || |||| || | ||||||||||| || | ||| || ||||| || || Sbjct 175146 ATGTTTGAAGTGAATGGCTCAAATGATTCATTGTTGCCAAGAATCTGTGCAGTGGAGGCG 175205 Query 77220 GTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTT 77279 || ||||| || |||| ||| | | || | || |||||| | ||| || | || Sbjct 175206 GTGGGCATGGGGGCCAGCAACAGAGAGTTCCGCAGGCCATGTTTCGCGATCTTCTGCTTC 175265 Query 77280 AGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATT 77339 ||| |||| ||||| || |||| ||| |||| | || ||||| | ||| Sbjct 175266 AGAGCACTCCAGTCCCACAGGTCTGTGGGTGTCTTTCCCCACATTTCATATTGCAATATT 175325 Query 77340 CCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCA 77399 || | ||| || | ||| ||| ||||||||| || | |||| || |||||| Sbjct 175326 CCTTCACTGGCCGGACAACCAGCATACGTTTCATAAACGCCGAGTTTTTCGGCCAGTTCA 175385 Query 77400 CAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGT 77459 || || ||||| || || || ||||| || ||||| || || | | |||||| | || Sbjct 175386 CAGCTAGCTTCTAAAGCCCCATAATAGATGGTTTCAAATATTTGTTGATTGAGCTTCTGG 175445 Query 77460 GCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACT 77519 ||| | ||| || | ||| | | | | ||| ||||| || | || || || Sbjct 175446 GCTCCTTCACTCTCGTAAGGAAGGCGCATCAATACAAAAGCATCGGCCAGACCTTGGACG 175505 Query 77520 CCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAA 77579 ||||| || ||||||| || ||| | || || |||| |||||||| | ||||| ||| Sbjct 175506 CCAATGCCGATAGGTCGGTGCCTCATGTTAGACTTTTTCGCTTCTGGGACGGGATAGTAA 175565 Query 77580 TTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTA 77639 |||| || ||||| || || || || | | | ||| ||| | |||||||| Sbjct 175566 TTAACATCGATAATCTTGTTCAGGTTCTCAGTTATGATTTTGGTCACTTGTTTTAGTTTC 175625 Query 77640 AGAAAATCAAATCTTCCA---TCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTA 77696 ||||||| || || | || | ||||||||||| | ||| || || || | || Sbjct 175626 TCAAAATCATATGTTTTATTTTCGGTTACAAACATGTTGACAGCAATTGACGCCAAGTTG 175685 Query 77697 CAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACAT 77756 ||||| ||||| |||| ||| | || | | ||||| || |||||||| || ||| Sbjct 175686 CAAACAGCTACTTCATCAGCAGATGTGTACTCAACAATCTCCGTGCATAGATTGCTGCAT 175745 Query 77757 TTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATA 77816 ||||| || |||| ||| | ||| ||||||||| | ||||||| || || ||||| || Sbjct 175746 TTGATGGTTCCCAAATTCTTTTGATTGCTCTTTCTGTTGCATGCATCTTTGTAAAGCATG 175805 Query 77817 AACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAG----- 77871 | ||||| || || || | |||| || ||||||| ||||| | || | || Sbjct 175806 TATGGAGTTCCAGTCTCTACTTGTGCCTCAATAATAGCCTTCCATAGGATTTGAGCGCGG 175865 Query 77872 -CTTTTATCATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAAT 77930 ||||| | | | | | ||| ||| |||||||| ||||| |||||| Sbjct 175866 ACTTTTTTAACAAACCT-----ACCT-TCTTGTTCATATTTCTGATATAATGCATCAAAT 175919 Query 77931 TCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCA 77990 |||||||||||| |||| |||| ||||||| || | |||||||| | ||| || Sbjct 175920 TCATCTCCCCAACAATCAGCCAAGCCAGGGCTGTCGTGAGGGCACATAAGGCTCCACTCC 175979 Query 77991 CCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCT 78050 | | | || ||| | ||||| || ||||| | ||||| |||||| || || ||| Sbjct 175980 TCGTTGTTCTCAACCCTCTTCATGAATAGATCTGAGATCCACAGAGCATAGAACAGCTCT 176039 Query 78051 CGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCA 78110 || | | ||| || || || || ||||| || | || || ||||| | || ||| Sbjct 176040 CGCGCGCGCACTTCCTCTTTGCCCGTGTTCTTCTTCAAGTCTAGGAACTCGAATATGTCA 176099 Query 78111 GAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCT 78170 | ||||| || || || || | || | | || || || || || || ||||| || Sbjct 176100 GCGTGCCACGGCTCGAGGTAGACGGCGAAGGCGCCGGGCCGCTTGTTGCCGCCCTGGTCC 176159 Query 78171 ATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCA 78230 | || | || ||||| || || || | || ||| || | | ||||| || || Sbjct 176160 ACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCATGGGCACCAGCCCGTTGGAGACGCCG 176219 Query 78231 TTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT----CCCTAT 78286 || || || | || || | || | || | || |||| | || ||||| Sbjct 176220 TTCGTGCCCGCGATGTAGGTGCCTTTCGCTCTGAT----GCAATGAACATGAACTCCTAT 176275 Query 78287 TCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTAT 78346 || || || || ||||||| || || | |||| || ||||||||||| || || Sbjct 176276 GCCGCCCGCGGATTTGGATATTAATGCACACTGCTTCAGAGTGTCGTAGATACCTTCGAT 176335 Query 78347 ACTGTCATCCATCATG 78362 ||||| ||| ||||| Sbjct 176336 GCTGTCGTCCTTCATG 176351 Score = 89.7 bits (98), Expect = 7e-13 Identities = 96/125 (77%), Gaps = 4/125 (3%) Strand=Plus/Plus Query 78542 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601 |||||| || || |||| || || ||| ||||| |||||||| |||||||||||||| Sbjct 176712 CTTATTGTTAATCTTCAGTAAATAAGATCGCTCCAAGGTTTTAAACCCAAAATAGTTGTA 176771 Query 78602 --TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACA 78659 ||||| ||||| ||||||| ||| |||||| || | ||||||| ||| | ||| Sbjct 176772 CTTGAAA--TCTCTGTCGTAAACAATGGCAGAATCCAGCCTTTCTTTGTTTTTCATCACA 176829 Query 78660 ATATC 78664 ||||| Sbjct 176830 ATATC 176834 >seq65 Length=1244346 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || ||||| || || || || |||||||| || || | ||||| Sbjct 631693 TCATCTCTGGAGATCAATTCATTGCTGAAGGTCAGTCCGGGCATGAGCCCTCTCTTTTTA 631634 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||| || || | |||||| ||||| ||||| ||||| || || ||||| ||||| Sbjct 631633 AGCCAGAAGATGGATGCGAAACTGCCAGAGAAGAAGATGCCCTCAACTGCCGCGAATGCT 631574 Query 48285 GTAAGTCTCTCTCCGTAACTGGCTTCGTTG-TGT--ATCCACCGTTGTGCCCAATCAGCC 48341 | ||| || ||| | | || ||| || |||||| | ||||| |||||| Sbjct 631573 ACTATTCTTTCACCGAATGTTGCGGTCTTGCTGCCGATCCACTGCATCGCCCAGTCAGCC 631514 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 |||||||||||||| || | || || | |||||| || || || Sbjct 631513 TTCTTCTTTACACAGGGAAGGGTCTCAACAGCATTGAACAGGAA 631470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694653222052160