Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq486 399 3e-106 seq65 96.9 5e-15 >seq486 Length=217039 Score = 399 bits (442), Expect = 3e-106 Identities = 1035/1572 (66%), Gaps = 18/1572 (1%) Strand=Plus/Plus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 || || || ||||||| ||| ||||| ||||| || | |||| |||| | |||||| Sbjct 174786 GCAGGCTTAGTACGTAAATAATACATTCCAGTCTTCAAGCCCATTTTCCACGCATAGAAA 174845 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 || || ||| | ||| ||| | || || |||| ||| || || | || ||||| Sbjct 174846 TGAATCGATGTCAATTTTCCATAGTTTGGTTCTGCTACATGGATGTTAAATGATTGACTC 174905 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 || || |||||||| || | ||| || ||||||| || ||||||| || || ||| Sbjct 174906 TGGTCAATGAAAGCACCACGATCCGCGGCCATTTGGATTGTGGTCTTCACAGATATCTCC 174965 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGATTTGTATTT---TGAATGGAT 75634 || | ||| ||| ||| | | | || || | |||| | || | | ||||||||| Sbjct 174966 CACACAGTCTTGTAAAGATCTCTTATTTCTTTGGGAATACTTTCAATAGACTGAATGGAT 175025 Query 75635 CCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAA 75694 || | |||||| ||| || || ||||||| ||| || | |||||| | | Sbjct 175026 CCATTGTTGTGTATAATGAGATTTTTCATATCATCATCCCATAAATCAGCCTCGGTGAGA 175085 Query 75695 ACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAA 75754 | | ||| || ||| | || || | || ||||||||||| | ||||||| |||| Sbjct 175086 TCGCGAAGCAGGTGATGGTTGACCACCTGGAATTCTCCAGAAAGAACTCTTCTTTGGTAA 175145 Query 75755 ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCA 75814 || || || |||| || | ||||||||||| || | ||| || ||||| || || Sbjct 175146 ATGTTTGAAGTGAATGGCTCAAATGATTCATTGTTGCCAAGAATCTGTGCAGTGGAGGCG 175205 Query 75815 GTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTT 75874 || ||||| || |||| ||| | | || | || |||||| | ||| || | || Sbjct 175206 GTGGGCATGGGGGCCAGCAACAGAGAGTTCCGCAGGCCATGTTTCGCGATCTTCTGCTTC 175265 Query 75875 AGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATT 75934 ||| |||| ||||| || |||| ||| |||| | || ||||| | ||| Sbjct 175266 AGAGCACTCCAGTCCCACAGGTCTGTGGGTGTCTTTCCCCACATTTCATATTGCAATATT 175325 Query 75935 CCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCG 75994 || | || || | ||| ||| ||||| ||| ||| ||||| || ||||| Sbjct 175326 CCTTCACTGGCCGGACAACCAGCATACGTTTCATAAACGCCGAGTTTTTCGGCCAGTTCA 175385 Query 75995 CAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGC 76054 || || || ||||| || || ||||| || ||||| || || | | ||| || | || Sbjct 175386 CAGCTAGCTTCTAAAGCCCCATAATAGATGGTTTCAAATATTTGTTGATTGAGCTTCTGG 175445 Query 76055 GCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACT 76114 ||| | ||| || ||||| | | | | ||| ||||| || || || || || Sbjct 175446 GCTCCTTCACTCTCGTAAGGAAGGCGCATCAATACAAAAGCATCGGCCAGACCTTGGACG 175505 Query 76115 CCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAA 76174 ||||| || ||||||| || ||| | || || ||| |||||||| | || || ||| Sbjct 175506 CCAATGCCGATAGGTCGGTGCCTCATGTTAGACTTTTTCGCTTCTGGGACGGGATAGTAA 175565 Query 76175 TTAATATCTATAATTTTATTGAGATTTCTGACAACT-ACTTTAACCACGTCCTTTAGTTT 76233 |||| ||| ||||| || || || || || | | | ||| ||| | |||||||| Sbjct 175566 TTAACATCGATAATCTTGTTCAGGTT-CTCAGTTATGATTTTGGTCACTTGTTTTAGTTT 175624 Query 76234 GAGAAAATCAAATTTTCCATCTA---TCACAAACATATTAAGAGCTATAGATGCTAGATT 76290 ||||||| || || || | | |||||||| || | ||| || || || | || Sbjct 175625 CTCAAAATCATATGTTTTATTTTCGGTTACAAACATGTTGACAGCAATTGACGCCAAGTT 175684 Query 76291 ACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACA 76350 ||||| ||||| |||| |||| | || | | ||||||||||||||||| || || Sbjct 175685 GCAAACAGCTACTTCATCAGCAGATGTGTACTCAACAATCTCCGTGCATAGATTGCTGCA 175744 Query 76351 CTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAAC 76410 ||||| ||||| | ||| | ||| ||||||||| |||| |||| || || ||||| | Sbjct 175745 TTTGATGGTTCCCAAATTCTTTTGATTGCTCTTTCTGTTGCATGCATCTTTGTAAAGCAT 175804 Query 76411 AAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGC--- 76467 | ||||||||||| || | |||| || ||||||| ||||| | || | ||| Sbjct 175805 GTATGGAGTTCCAGTCTCTACTTGTGCCTCAATAATAGCCTTCCATAGGATTTGAGCGCG 175864 Query 76468 --TTTTATTATAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAAT 76525 ||| ||| | | || | ||| |||||||| |||||| |||||| Sbjct 175865 GACTTTTTTA-ACAAACCTACC----TTCTTGTTCATATTTCTGATATAATGCATCAAAT 175919 Query 76526 TCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCA 76585 |||||||||||| |||| |||| ||||| | || | || ||||| | |||||| Sbjct 175920 TCATCTCCCCAACAATCAGCCAAGCCAGGGCTGTCGTGAGGGCACATAAGGCTCCACTCC 175979 Query 76586 CCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCT 76645 | | | || ||||| ||||| || ||||| | ||||| |||||| || || ||| Sbjct 175980 TCGTTGTTCTCAACCCTCTTCATGAATAGATCTGAGATCCACAGAGCATAGAACAGCTCT 176039 Query 76646 CGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCA 76705 || | | ||| || || || || ||||| || | ||||||||||| | || ||| Sbjct 176040 CGCGCGCGCACTTCCTCTTTGCCCGTGTTCTTCTTCAAGTCTAGGAACTCGAATATGTCA 176099 Query 76706 GAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCT 76765 | ||||| || || || || | || | | || || || || || || ||||| || Sbjct 176100 GCGTGCCACGGCTCGAGGTAGACGGCGAAGGCGCCGGGCCGCTTGTTGCCGCCCTGGTCC 176159 Query 76766 ATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCA 76825 | || | || ||||| || || || | || ||| || | | ||||| || || Sbjct 176160 ACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCATGGGCACCAGCCCGTTGGAGACGCCG 176219 Query 76826 TTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCT 76885 || || || | || || | || || | || | || | | ||||| || Sbjct 176220 TTCGTGCCCGCGATGTAGGTGCCTTTCGCTCTGATGCAATGAACATGAACTCCTATGCCG 176279 Query 76886 CCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTA 76945 || || ||| || |||| ||||| | |||| ||||| ||||| || || || || Sbjct 176280 CCCGCGGATTTGGATATTAATGCACACTGCTTCAGAGTGTCGTAGATACCTTCGATGCTG 176339 Query 76946 TCATCCATCATG 76957 || ||| ||||| Sbjct 176340 TCGTCCTTCATG 176351 >seq65 Length=1244346 Score = 96.9 bits (106), Expect = 5e-15 Identities = 157/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || ||||| || || || || || ||||| || || | |||||| Sbjct 631693 TCATCTCTGGAGATCAATTCATTGCTGAAGGTCAGTCCGGGCATGAGCCCTCTCTTTTTA 631634 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| || || | |||||| ||||| ||||| ||||| || || ||||||||||| Sbjct 631633 AGCCAGAAGATGGATGCGAAACTGCCAGAGAAGAAGATGCCCTCAACTGCCGCGAATGCT 631574 Query 46774 ACAAGTCTCTCTCCGTAACTGGC-ATCATTATG--AATCCACCTTTGAGCCCAATCAGCC 46830 || | ||| || ||| | | || || | || |||||| ||||| |||||| Sbjct 631573 ACTATTCTTTCACCGAATGTTGCGGTCTTGCTGCCGATCCACTGCATCGCCCAGTCAGCC 631514 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 || ||||||||||| || | || || | |||||| || || || Sbjct 631513 TTCTTCTTTACACAGGGAAGGGTCTCAACAGCATTGAACAGGAA 631470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712918412446080