Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_031042.1 Length=111325 Score E Sequences producing significant alignments: (Bits) Value seq637 136 3e-27 seq236 84.2 2e-11 >seq637 Length=122170 Score = 136 bits (150), Expect = 3e-27 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 110481 CAAATCCCATTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACG 110540 ||| ||| |||||| | |||||| || ||||| | |||||||| | ||| ||||| Sbjct 107097 CAATTCCACTTACATGGACTGAGTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTT 107156 Query 110541 AGTCAGTGCGTTAAATCGAACAGCGTAGCCAGAGACACGGATAGTTAATTGAGGGTATTT 110600 |||||| | |||||| || || ||||||||||| |||||||| || | ||||| ||||| Sbjct 107157 AGTCAGGGAGTTAAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTT 107216 Query 110601 TTCAGGGTGTTTCTGTGCATCCAAAAGCTGATCACGACTTAACACATTGACATTTAGGTG 110660 ||||| |||| | ||||| | ||| ||||| | | || || || || ||||| Sbjct 107217 CTCAGGATGTTCCATCGCATCGAGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTG 107276 Query 110661 CTGACCACCTTCGAT 110675 ||||||||||||||| Sbjct 107277 CTGACCACCTTCGAT 107291 >seq236 Length=545527 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 110502 AGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCGTTAAATCGAAC 110561 |||||| ||||| ||||||||| ||| ||||| | ||||| | ||| || || || Sbjct 30883 AGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTCAGAGAGTTGAAGCGTAC 30824 Query 110562 AGCGTAGCCAGAGACACGGATAGTTAATTGAGGGTATTTTTCAGGGTGTTTCTGTGCATC 110621 || || ||||| || || || || | || ||||||||||| ||||| | || || Sbjct 30823 CGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCTGGGTGCTCAACCGCGTC 30764 Query 110622 CAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTGACCACCTTC 110672 || ||| || || | | || || || || ||||||||||||||||| Sbjct 30763 CATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGACCACCTTC 30713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356107413763724