Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq813 170 5e-38 seq1001 91.5 4e-14 >seq813 Length=55966 Score = 170 bits (188), Expect = 5e-38 Identities = 210/287 (73%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 26929 TTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCATTTACGGGTTCGCAGACCGCC 26988 ||| |||||||| |||| |||| |||||| |||||||||||||| ||||| ||| Sbjct 13481 TTCGGTGGTGTACTTCTCAGCGCCGGACTGATCGGTCCATTTACGGGTGCGCAGTTGGCC 13540 Query 26989 TTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAGCGATTTCCGCCAGCTTGCC 27048 ||| || | |||| ||||| ||||| || ||||| || | ||| ||||| ||||| Sbjct 13541 TTCGATATAGACCTGAGAACCTTTACGCAGATACTCACCGGCAACTTCTGCCAGTTTGCC 13600 Query 27049 GAAGATGACAACGCGGTGCCATTCCGTCTGCTCTTTTGGTTCGCCTGTGGCCTTATCTTT 27108 || | || |||||||||||||| ||||||||||| || || || || ||||| Sbjct 13601 AAACAGCACCACGCGGTGCCATTCAGTCTGCTCTTTCATCTCACCGGTCGCTTTATCACG 13660 Query 27109 CCACTTTTCGGTTGTGGCAATGCTGAGATTGGCAACTGCGCCACCTGACGGCATGTAGCG 27168 ||| ||||| || || | | | ||||||||||||||||| |||||||||||| Sbjct 13661 CCAGGATTCGGAAGTAGCCAGCGTAATGTTGGCAACTGCGCCACCACTCGGCATGTAGCG 13720 Query 27169 CACTTCTGGATCGTTGCCTAAATTACCGATTAACTGCACCTGGTTTA 27215 ||||| || || | ||| | |||||||| | ||||| ||||| Sbjct 13721 TACTTCCGGGTCCTGGCCCAGATTACCGACGAGAATCACCTTGTTTA 13767 >seq1001 Length=29257 Score = 91.5 bits (100), Expect = 4e-14 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 10117 GCGTCAGCGCGTCAACGAGGCTGCAAAAGCCGTCATGCTGGCTTACGCTACTGGCGCAGA 10176 ||| ||||||||||||||||| || || ||||||||||| |||||| | || || Sbjct 2918 GCGACAGCGCGTCAACGAGGCCGCGCGTGCGGTCATGCTGGCCTACGCTGCAGGAAGCGA 2977 Query 10177 CCTGGACCAGCTTGGCGCTAACGTGGGCGTACAGCGTCAGGTCATTACGCCTGCTGATGA 10236 ||| |||||| | |||| || ||| |||| | || || || ||||| || || Sbjct 2978 CCTTGACCAGATAGGCGGAAATTACAACGTTGAGCGCCTTGTTATCACCCCTGCAGACGA 3037 Query 10237 CACCACCGTGCCGCCAACGCCTGCCTTCATGGAATCAGAC 10276 ||| || | ||||| ||||||||| | ||||| || ||| Sbjct 3038 CACGACGTTACCGCCGACGCCTGCCGTGATGGAGTCGGAC 3077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134013144956640