Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_031057.1
Length=180219
Score E
Sequences producing significant alignments: (Bits) Value
seq974 178 1e-39
seq236 150 2e-31
seq962 132 6e-26
seq637 109 6e-19
seq754 87.8 2e-12
>seq974
Length=31311
Score = 178 bits (196), Expect = 1e-39
Identities = 253/356 (71%), Gaps = 0/356 (0%)
Strand=Plus/Minus
Query 43399 CCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAGTG 43458
|||||||| || ||| |||| ||||| || || || |||||||| | |||||| ||
Sbjct 356 CCTACGCCAATCATGTCTGGCGTGCGCACCCCAACCCGTCAGTTCAGCTCCTGCGTACTG 297
Query 43459 ATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCTGCGATCGTGAAGTAT 43518
|| || | ||||| |||| ||| | || || || || |||||||| ||
Sbjct 296 ATCGAGTGTGGTGACAGCCTGGATTCCATCAACGCCACGTCCAGCGCCATCGTGAAATAC 237
Query 43519 ATTTCACAACGCGCGGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGGGTTCTAAA 43578
|||| || || || |||||||| | || || || | ||| || || ||||
Sbjct 236 GTTTCCCAGCGTGCCGGTATCGGCATCAACGCCGGTCGCATCCGTGCGCTGGGCAGCCCG 177
Query 43579 ATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACATATTCAGACA 43638
|| || || ||||||||| | || || ||| |||||||||| || || | |||||
Sbjct 176 ATTCGCGGCGGTGAAGCATTCCACACCGGCTGTATCCCGTTCTATAAGCACTTCCAGACG 117
Query 43639 GCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTATTATCCG 43698
||||| |||||||| || || || ||||| || || |||||||| || ||| || ||
Sbjct 116 GCGGTAAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCTACCCT 57
Query 43699 ATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGA 43754
|| ||||| ||||||| |||| ||||||||| |||||||||||| ||||||||
Sbjct 56 ATGTGGCACCTGGAAGTGGAAAGCCTGCTGGTCCTGAAAAACAACCGTGGTGTTGA 1
>seq236
Length=545527
Score = 150 bits (166), Expect = 2e-31
Identities = 145/186 (78%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 53416 GTTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGGAAGATGCT 53475
|| |||||||| |||||||| ||||| || || || || |||||||| ||| || ||
Sbjct 30710 GTGGAAGGTGGTCAGCACCTTAACGTAAACGTACTGCGCCGCGAAACGCTGATGGACGCG 30769
Query 53476 GTGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGC 53535
|| | || || || || ||||| ||| | || || ||||| || |||||||| || |||
Sbjct 30770 GTTGAGCACCCAGAAAAATACCCGCAGCTGACCATTCGCGTGTCTGGTTATGCGGTACGC 30829
Query 53536 TTTAATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGC 53595
|| || | ||||| |||||||| ||||||||||||||||| | |||||||| ||||||
Sbjct 30830 TTCAACTCTCTGACCCCAGAACAGCAGCGCGACGTTATCGCGCGTACCTTTACTGAAAGC 30889
Query 53596 ATGTAA 53601
|||||
Sbjct 30890 CTGTAA 30895
>seq962
Length=32987
Score = 132 bits (146), Expect = 6e-26
Identities = 253/368 (69%), Gaps = 6/368 (2%)
Strand=Plus/Minus
Query 155821 CAACGAGAACGCGAACAAAGACGCAAGGGTTTTCCCGACACAGCGCGATCTGTTGGCGGG 155880
||| || ||||| ||||||||| | || |||| || |||||||||||| |||| ||
Sbjct 25741 CAATGAAAACGCCAACAAAGACAGTAAAGTGATCCCCACCCAGCGCGATCTGCTGGCCGG 25682
Query 155881 TATCGTAGCGAAACACTTCGCACGTAACCACATTCTACCAAAACACATCGTAGAAGCGCA 155940
|||||| || ||||||| || ||| | ||| | || || | | || ||||||
Sbjct 25681 TATCGTCGCCAAACACTATGCCCGTCAGCACCTGCTGCCGCGCGATGTGGTCTCAGCGCA 25622
Query 155941 TGATTCTGGTGATATCCATTATCATGATCTGGATTACAGCCCGTTCACGCC-ATACACAA 155999
|| ||||| ||||| ||||| ||||| || || |||||| || || |||
Sbjct 25621 CGAGCGCGGTGAGATCCACTATCACGATCTCGACTATTCACCGTTCTTCCCGATGTTCAA 25562
Query 156000 ACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAG 156059
||| ||| | || ||||||| |||||| | | || || || ||||||||||| |
Sbjct 25561 -CTGTATGCTGATTGACCTGAAAGGCATGCTGACCCACGGGTTTAAAATGGGTAACGCCG 25503
Query 156060 ACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCAC 156119
| || ||||| || ||||| ||| || ||||| | | ||||||||| | ||| |
Sbjct 25502 AGATTGAACCGCCAAAATCCATCTCCACCGCCACTGCGGTCACGGCACAGATTATCGCCC 25443
Query 156120 AGATTGCTTCTCACCAGTACGGCGGGACAACCTTTGCAAACG--TGGATAAAGTGCTGGC 156177
|| | || ||| |||||||| || ||| || || || | || ||||||||||
Sbjct 25442 AGGTCGCCAGCCACATTTACGGCGGCACCACCATT--AACCGCATTGACGAAGTGCTGGC 25385
Query 156178 TCCGTATG 156185
|||| ||
Sbjct 25384 CCCGTTTG 25377
>seq637
Length=122170
Score = 109 bits (120), Expect = 6e-19
Identities = 134/183 (73%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 53419 GAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGGAAGATGCTGTG 53478
|||||||| |||||||| |||||||| || | || |||| ||| ||||| ||
Sbjct 107288 GAAGGTGGTCAGCACCTGAACGTGAACGTAATGAACCGTGAAATGCTGCTCGATGCGATG 107229
Query 53479 AAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGCTTT 53538
||||||||||||| || || ||| | || ||||| || || || || ||||| || |||
Sbjct 107228 GAACATCCTGAGAAATATCCTCAGCTGACCATCCGTGTATCTGGCTACGCAGTACGTTTT 107169
Query 53539 AATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGCATG 53598
|| | |||||| |||||| |||| ||||||||| || | || || || | ||||
Sbjct 107168 AACTCCCTGACTAAAGAACAGCAGCAGGACGTTATCACCCGTACTTTCACTCAGTCCATG 107109
Query 53599 TAA 53601
|||
Sbjct 107108 TAA 107106
>seq754
Length=71200
Score = 87.8 bits (96), Expect = 2e-12
Identities = 197/296 (67%), Gaps = 0/296 (0%)
Strand=Plus/Plus
Query 42279 AACGAACTGAAAACCACACCAGACGATCGCGGGATCATCGTTTCCGCATGGAACCCTGTT 42338
||| | ||||||| | |||||| ||| | ||||| |||||||| |||||| |
Sbjct 66364 AACCAGCTGAAAAACGATCCAGACTCGCGCCGAATCATTGTTTCCGCCTGGAACGTCGGC 66423
Query 42339 GATCTGGATAAAATGGCATTGCGTCCGTGTCACTGTTTCTTCCAGTTCGTCGTAATCAAC 42398
|| ||||| |||||||| || ||||| ||| |||||||||||| ||| ||
Sbjct 66424 GAGCTGGACAAAATGGCGCTGGCACCGTGCCACGCGTTCTTCCAGTTCTACGTCGCTGAC 66483
Query 42399 GGTAAACTGTCTCTACAGTGGTATCAGCGTTCGGTTGATGTCTTCTTAGGGTTGCCGTTC 42458
|| || || || ||| || |||||||| |||||| ||| | || |||||||
Sbjct 66484 GGAAAGCTCTCCTGCCAGCTCTACCAGCGTTCCTGTGATGTGTTCCTCGGCCTGCCGTTT 66543
Query 42459 AATATCGCCTCCTACGCTCTCCTGACGCATATTATCGCTGATATTTGCGGGTACGAAGTA 42518
|| || ||| ||| || || | ||||| || || | || | |||||
Sbjct 66544 AACATTGCCAGCTATGCGCTGTTAGTCCATATGATGGCGCAGCAGTGTGACCTGGAAGTG 66603
Query 42519 GGTGATCTGGTTTGGACAGGTGGTGATGTCCATATCTACAAAAACGCAATCGAGCA 42574
|| ||| | || ||||| ||||| || |||| |||||| ||| || |||||
Sbjct 66604 GGGGATTTTGTCTGGACCGGTGGGGACACCCATCTCTACAGCAACCATATGGAGCA 66659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 576559870354960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |