Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_031057.1 Length=180219 Score E Sequences producing significant alignments: (Bits) Value seq974 178 1e-39 seq236 150 2e-31 seq962 132 6e-26 seq637 109 6e-19 seq754 87.8 2e-12 >seq974 Length=31311 Score = 178 bits (196), Expect = 1e-39 Identities = 253/356 (71%), Gaps = 0/356 (0%) Strand=Plus/Minus Query 43399 CCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTTGCGTAGTG 43458 |||||||| || ||| |||| ||||| || || || |||||||| | |||||| || Sbjct 356 CCTACGCCAATCATGTCTGGCGTGCGCACCCCAACCCGTCAGTTCAGCTCCTGCGTACTG 297 Query 43459 ATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCTGCGATCGTGAAGTAT 43518 || || | ||||| |||| ||| | || || || || |||||||| || Sbjct 296 ATCGAGTGTGGTGACAGCCTGGATTCCATCAACGCCACGTCCAGCGCCATCGTGAAATAC 237 Query 43519 ATTTCACAACGCGCGGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGGGTTCTAAA 43578 |||| || || || |||||||| | || || || | ||| || || |||| Sbjct 236 GTTTCCCAGCGTGCCGGTATCGGCATCAACGCCGGTCGCATCCGTGCGCTGGGCAGCCCG 177 Query 43579 ATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACATATTCAGACA 43638 || || || ||||||||| | || || ||| |||||||||| || || | ||||| Sbjct 176 ATTCGCGGCGGTGAAGCATTCCACACCGGCTGTATCCCGTTCTATAAGCACTTCCAGACG 117 Query 43639 GCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGTATTATCCG 43698 ||||| |||||||| || || || ||||| || || |||||||| || ||| || || Sbjct 116 GCGGTAAAATCCTGCTCTCAGGGCGGCGTGCGCGGCGGTGCTGCGACCCTGTTCTACCCT 57 Query 43699 ATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTGTTGA 43754 || ||||| ||||||| |||| ||||||||| |||||||||||| |||||||| Sbjct 56 ATGTGGCACCTGGAAGTGGAAAGCCTGCTGGTCCTGAAAAACAACCGTGGTGTTGA 1 >seq236 Length=545527 Score = 150 bits (166), Expect = 2e-31 Identities = 145/186 (78%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 53416 GTTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGGAAGATGCT 53475 || |||||||| |||||||| ||||| || || || || |||||||| ||| || || Sbjct 30710 GTGGAAGGTGGTCAGCACCTTAACGTAAACGTACTGCGCCGCGAAACGCTGATGGACGCG 30769 Query 53476 GTGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGC 53535 || | || || || || ||||| ||| | || || ||||| || |||||||| || ||| Sbjct 30770 GTTGAGCACCCAGAAAAATACCCGCAGCTGACCATTCGCGTGTCTGGTTATGCGGTACGC 30829 Query 53536 TTTAATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGC 53595 || || | ||||| |||||||| ||||||||||||||||| | |||||||| |||||| Sbjct 30830 TTCAACTCTCTGACCCCAGAACAGCAGCGCGACGTTATCGCGCGTACCTTTACTGAAAGC 30889 Query 53596 ATGTAA 53601 ||||| Sbjct 30890 CTGTAA 30895 >seq962 Length=32987 Score = 132 bits (146), Expect = 6e-26 Identities = 253/368 (69%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 155821 CAACGAGAACGCGAACAAAGACGCAAGGGTTTTCCCGACACAGCGCGATCTGTTGGCGGG 155880 ||| || ||||| ||||||||| | || |||| || |||||||||||| |||| || Sbjct 25741 CAATGAAAACGCCAACAAAGACAGTAAAGTGATCCCCACCCAGCGCGATCTGCTGGCCGG 25682 Query 155881 TATCGTAGCGAAACACTTCGCACGTAACCACATTCTACCAAAACACATCGTAGAAGCGCA 155940 |||||| || ||||||| || ||| | ||| | || || | | || |||||| Sbjct 25681 TATCGTCGCCAAACACTATGCCCGTCAGCACCTGCTGCCGCGCGATGTGGTCTCAGCGCA 25622 Query 155941 TGATTCTGGTGATATCCATTATCATGATCTGGATTACAGCCCGTTCACGCC-ATACACAA 155999 || ||||| ||||| ||||| ||||| || || |||||| || || ||| Sbjct 25621 CGAGCGCGGTGAGATCCACTATCACGATCTCGACTATTCACCGTTCTTCCCGATGTTCAA 25562 Query 156000 ACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAG 156059 ||| ||| | || ||||||| |||||| | | || || || ||||||||||| | Sbjct 25561 -CTGTATGCTGATTGACCTGAAAGGCATGCTGACCCACGGGTTTAAAATGGGTAACGCCG 25503 Query 156060 ACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCAC 156119 | || ||||| || ||||| ||| || ||||| | | ||||||||| | ||| | Sbjct 25502 AGATTGAACCGCCAAAATCCATCTCCACCGCCACTGCGGTCACGGCACAGATTATCGCCC 25443 Query 156120 AGATTGCTTCTCACCAGTACGGCGGGACAACCTTTGCAAACG--TGGATAAAGTGCTGGC 156177 || | || ||| |||||||| || ||| || || || | || |||||||||| Sbjct 25442 AGGTCGCCAGCCACATTTACGGCGGCACCACCATT--AACCGCATTGACGAAGTGCTGGC 25385 Query 156178 TCCGTATG 156185 |||| || Sbjct 25384 CCCGTTTG 25377 >seq637 Length=122170 Score = 109 bits (120), Expect = 6e-19 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 53419 GAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGGAAGATGCTGTG 53478 |||||||| |||||||| |||||||| || | || |||| ||| ||||| || Sbjct 107288 GAAGGTGGTCAGCACCTGAACGTGAACGTAATGAACCGTGAAATGCTGCTCGATGCGATG 107229 Query 53479 AAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGCTTT 53538 ||||||||||||| || || ||| | || ||||| || || || || ||||| || ||| Sbjct 107228 GAACATCCTGAGAAATATCCTCAGCTGACCATCCGTGTATCTGGCTACGCAGTACGTTTT 107169 Query 53539 AATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGCATG 53598 || | |||||| |||||| |||| ||||||||| || | || || || | |||| Sbjct 107168 AACTCCCTGACTAAAGAACAGCAGCAGGACGTTATCACCCGTACTTTCACTCAGTCCATG 107109 Query 53599 TAA 53601 ||| Sbjct 107108 TAA 107106 >seq754 Length=71200 Score = 87.8 bits (96), Expect = 2e-12 Identities = 197/296 (67%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 42279 AACGAACTGAAAACCACACCAGACGATCGCGGGATCATCGTTTCCGCATGGAACCCTGTT 42338 ||| | ||||||| | |||||| ||| | ||||| |||||||| |||||| | Sbjct 66364 AACCAGCTGAAAAACGATCCAGACTCGCGCCGAATCATTGTTTCCGCCTGGAACGTCGGC 66423 Query 42339 GATCTGGATAAAATGGCATTGCGTCCGTGTCACTGTTTCTTCCAGTTCGTCGTAATCAAC 42398 || ||||| |||||||| || ||||| ||| |||||||||||| ||| || Sbjct 66424 GAGCTGGACAAAATGGCGCTGGCACCGTGCCACGCGTTCTTCCAGTTCTACGTCGCTGAC 66483 Query 42399 GGTAAACTGTCTCTACAGTGGTATCAGCGTTCGGTTGATGTCTTCTTAGGGTTGCCGTTC 42458 || || || || ||| || |||||||| |||||| ||| | || ||||||| Sbjct 66484 GGAAAGCTCTCCTGCCAGCTCTACCAGCGTTCCTGTGATGTGTTCCTCGGCCTGCCGTTT 66543 Query 42459 AATATCGCCTCCTACGCTCTCCTGACGCATATTATCGCTGATATTTGCGGGTACGAAGTA 42518 || || ||| ||| || || | ||||| || || | || | ||||| Sbjct 66544 AACATTGCCAGCTATGCGCTGTTAGTCCATATGATGGCGCAGCAGTGTGACCTGGAAGTG 66603 Query 42519 GGTGATCTGGTTTGGACAGGTGGTGATGTCCATATCTACAAAAACGCAATCGAGCA 42574 || ||| | || ||||| ||||| || |||| |||||| ||| || ||||| Sbjct 66604 GGGGATTTTGTCTGGACCGGTGGGGACACCCATCTCTACAGCAACCATATGGAGCA 66659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576559870354960