Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq754 230 1e-55 >seq754 Length=71200 Score = 230 bits (254), Expect = 1e-55 Identities = 519/771 (67%), Gaps = 23/771 (3%) Strand=Plus/Plus Query 821 GGCAAGTCGAAGGATGATCGCACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTG 880 |||| | |||| | || || ||||||||||| ||||| || || ||| |||| || Sbjct 66058 GGCACGCCGAAAAACGACCGTACCGGCACCGGTACGCTCTCCATTTTTGGCCACCAGATG 66117 Query 881 CGGTACGACCTCACCGAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCG 940 || | | | | || |||||||| ||||| || || |||||| ||| | ||| Sbjct 66118 CGCTTCAATTTACAGGAAGGCTTCCCTCTGGTGACGACTAAGCGCTGCCATCTGCGCTCG 66177 Query 941 GTTGCGTACGAACTTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGAC 1000 | | ||||| || |||||||| ||||| || ||||| | || |||| Sbjct 66178 ATCATTCATGAACTGCTCTGGTTCCTGCAAGGCGATACCAACGTTGCGTATCTGCACGAA 66237 Query 1001 AACGGCGTCACCATCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTAC 1060 ||| |||| ||||||||||||| ||||| || | ||| ||||| || || || ||| Sbjct 66238 AACAACGTCTCCATCTGGGACGAATGGGCAGATGAAAACGGCAACCTGGGCCCGGTTTAC 66297 Query 1061 GGCGCGCAGTGGCG-GCACTGGCATGTCGAGGACGGAGGATCGTCGTGGATTGACCAGAT 1119 ||| ||||||||| ||| |||| | | | | || | || | | ||||||||||| Sbjct 66298 GGCAAGCAGTGGCGCGCA-TGGC----CAACGCCTGATGGCCGCCAT--ATTGACCAGAT 66350 Query 1120 CTCGGCCGCCGTGGAGCTGCTTCGCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGC 1179 | | ||| || | | ||| | || || ||||||||||| | | | || ||||| Sbjct 66351 CACCACCGTGATGAACCAGCTGAAAAACGATCCAGACTCGCGCCGAATCATTGTTTCCGC 66410 Query 1180 ATGGAACGTCGGTGACCTCAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCT 1239 ||||||||||| || || | | ||||| || ||||||||| | |||||| | Sbjct 66411 CTGGAACGTCGGCGAGCTGGACAAAATGGCGCTGGCACCGTGCCACGCGTTCTTCCAGTT 66470 Query 1240 GTACGTCGTCGACGGCCGGCTCTCGCTG-CAGGTCTACCAGCGCAGCGCGGACATGTTCC 1298 ||||||| ||||| |||||| ||| ||| |||||||||| | || |||||| Sbjct 66471 CTACGTCGCTGACGGAAAGCTCTC-CTGCCAGCTCTACCAGCGTTCCTGTGATGTGTTCC 66529 Query 1299 TCGGTGTGCCGTTCAATATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGG 1358 |||| ||||||| || || ||| || ||||| | | || ||| | ||||||||| Sbjct 66530 TCGGCCTGCCGTTTAACATTGCCAGCTATGCGCTGTTAGTCCATATGATGGCGCAGCAGT 66589 Query 1359 CCGGCCTGCGGGTGGGTGAGCTGATCTGGACCGGCGGCGACTGCCACATCTACAACAACC 1418 | |||| ||||| || | |||||||||| || ||| ||| |||||| ||||| Sbjct 66590 GTGACCTGGAAGTGGGGGATTTTGTCTGGACCGGTGGGGACACCCATCTCTACAGCAACC 66649 Query 1419 ACGTCGACCAGGCGCTGATGCAGCTCCGCCGACGACCGCG-GCCCTACCCGAGGCTCGTG 1477 | | || ||| | | | ||||| ||| |||||| || || |||| |||| | Sbjct 66650 ATATGGAGCAGACCCATCTCCAGCTGACCCGCGAACCGCGCGCGCT-GCCGAAGCTCAT- 66707 Query 1478 CTACACCACGCGC-------CGTCGATCTTCGACTACCGGTACGAGCACATCCACCTCGT 1530 || || |||| |||| ||||| |||||||| | ||| | | | | | Sbjct 66708 ---CATCAAGCGCAAACCGGCGTCAATCTTTGACTACCGCTTCGATGATTTTGAGATTGA 66764 Query 1531 GAACTACGACCCGCACCCGTCGATCAAGGCGCCGGTGGCCGTCTGATGGGG 1581 | ||||||||||||||| ||||| ||||| || || ||||||| || Sbjct 66765 GGGCTACGACCCGCACCCTGGCATCAAAGCGCCCGTCGCTATCTGATGCGG 66815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296124725276394