Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_031087.1
Length=168272
Score E
Sequences producing significant alignments: (Bits) Value
seq236 208 8e-49
seq637 165 9e-36
seq974 154 2e-32
seq895 114 1e-20
>seq236
Length=545527
Score = 208 bits (230), Expect = 8e-49
Identities = 150/173 (87%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 60000 TCTGTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGGAGTTAAAGCGC 60059
|| || || ||||| |||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 30885 TCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTCAGAGAGTTGAAGCGT 30826
Query 60060 ACCGCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGATGCTCAACCGCG 60119
||||| || || || || |||||||| ||||||||||||||||| || ||||||||||||
Sbjct 30825 ACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCTGGGTGCTCAACCGCG 30766
Query 60120 TCCAGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTC 60172
|||| ||| |||||||| ||||| ||||| ||||| ||||||||||| |||||
Sbjct 30765 TCCATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGACCACCTTC 30713
>seq637
Length=122170
Score = 165 bits (182), Expect = 9e-36
Identities = 154/196 (79%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 59980 TCAATTGCCATTATAGTGCCTCTGTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTG 60039
|||||| | ||| | | || ||||||||||||| ||||||||| |||||||||||
Sbjct 107096 TCAATTCCACTTACATGGACTGAGTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTT 107155
Query 60040 GTGTCAGGGAGTTAAAGCGCACCGCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATT 60099
|||||||||||||| || || |||||||| || ||||| ||||| ||||| || ||||
Sbjct 107156 TAGTCAGGGAGTTAAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGAGGATATT 107215
Query 60100 TTTCCGGATGCTCAACCGCGTCCAGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGT 60159
| || ||||| || | ||| || ||||| |||| || || ||||| ||||||||||
Sbjct 107216 TCTCAGGATGTTCCATCGCATCGAGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGT 107275
Query 60160 GCTGACCGCCTTCAAT 60175
||||||| ||||| ||
Sbjct 107276 GCTGACCACCTTCGAT 107291
>seq974
Length=31311
Score = 154 bits (170), Expect = 2e-32
Identities = 278/404 (69%), Gaps = 2/404 (0%)
Strand=Plus/Plus
Query 141297 TCTACACCTTTGTTGTTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGA 141356
|| ||||| |||||| || || || || ||| |||| ||||||| |||||| || ||
Sbjct 1 TCAACACCACGGTTGTTTTTCAGGACCAGCAGGCTTTCCACTTCCAGGTGCCACATAGGG 60
Query 141357 TAGTACAGTGTCGCCGCGCCACCACGGACTCCACCTTGGGAGCAGGATTTAACTGCTGTT 141416
||| |||| ||||| || || || || || || || || ||||||||||| || || ||
Sbjct 61 TAGAACAGGGTCGCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGATTTTACCGCCGTC 120
Query 141417 TGGAAGTGTTTCCAGAAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAATTTTT 141476
|||||||| || |||| || ||| || || || |||||||| | |||
Sbjct 121 TGGAAGTGCTTATAGAACGGGATACAGCCGGTGTGGAATGCTTCACCGCCGCGAATCGGG 180
Query 141477 GAACCCTCGGCGCGAATCATGCCTGCATTAATACCAATACCTGCACGCTTACTGATGTAT 141536
||| || || || || || || || || ||||| ||||||| | ||||
Sbjct 181 CTGCCCAGCGCACGGATGCGACCGGCGTTGATGCCGATACCGGCACGCTGGGAAACGTAT 240
Query 141537 TTCGTAATTGATGCAGCA-GCTTCGTTAATTGAATTAAGACTATCACCACCTTCAATAAC 141595
||| | || || | | | |||| || |||| || || ||||||| || || |
Sbjct 241 TTCACGA-TGGCGCTGGACGTGGCGTTGATGGAATCCAGGCTGTCACCACACTCGATCAG 299
Query 141596 CACGCATGAACTGAACTGGCGTGTCGGAGTACGAACACCAGACATAATTGGTGTTGGCAA 141655
||||| || |||||||| || || || || || || |||||||| ||||| || ||||
Sbjct 300 TACGCAGGAGCTGAACTGACGGGTTGGGGTGCGCACGCCAGACATGATTGGCGTAGGCAG 359
Query 141656 TGAAATCTTTTTAGTAGAAACTGCATCATAGAAACGAATAACGT 141699
|||||||| || || || ||||| |||||||| | ||||
Sbjct 360 AGAAATCTTGAACGTCGATACCGCATCGTAGAAACGCTTCACGT 403
>seq895
Length=39754
Score = 114 bits (126), Expect = 1e-20
Identities = 114/148 (77%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 60028 GCTGCTGTTCTGGTGTCAGGGAGTTAAAGCGCACCGCGTAGCCGGAAACACGAATGGTAA 60087
||||||| || | ||||||| ||||| |||||||| ||||| || || || ||||| |
Sbjct 11905 GCTGCTGCTCGCGCGTCAGGGCATTAAACCGCACCGCATAGCCCGAGACGCGGATGGTCA 11964
Query 60088 GCTGCGGGTATTTTTCCGGATGCTCAACCGCGTCCAGCAGAGTTTCGCGACGCAGCACGT 60147
| | |||||| || || |||||| ||| || || || || | || || || |||||
Sbjct 11965 GGTTCGGGTAGTTCTCGGGATGCGCAATGGCATCGAGGAGCATCTCCCGGTTCATCACGT 12024
Query 60148 TAACGTTCAGGTGCTGACCGCCTTCAAT 60175
|||||||||||||||| ||||| |||||
Sbjct 12025 TAACGTTCAGGTGCTGCCCGCCCTCAAT 12052
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 538330327671680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |