Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_031087.1 Length=168272 Score E Sequences producing significant alignments: (Bits) Value seq236 208 8e-49 seq637 165 9e-36 seq974 154 2e-32 seq895 114 1e-20 >seq236 Length=545527 Score = 208 bits (230), Expect = 8e-49 Identities = 150/173 (87%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 60000 TCTGTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGGAGTTAAAGCGC 60059 || || || ||||| |||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct 30885 TCAGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTCAGAGAGTTGAAGCGT 30826 Query 60060 ACCGCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGATGCTCAACCGCG 60119 ||||| || || || || |||||||| ||||||||||||||||| || |||||||||||| Sbjct 30825 ACCGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCTGGGTGCTCAACCGCG 30766 Query 60120 TCCAGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTC 60172 |||| ||| |||||||| ||||| ||||| ||||| ||||||||||| ||||| Sbjct 30765 TCCATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGACCACCTTC 30713 >seq637 Length=122170 Score = 165 bits (182), Expect = 9e-36 Identities = 154/196 (79%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 59980 TCAATTGCCATTATAGTGCCTCTGTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTG 60039 |||||| | ||| | | || ||||||||||||| ||||||||| ||||||||||| Sbjct 107096 TCAATTCCACTTACATGGACTGAGTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTT 107155 Query 60040 GTGTCAGGGAGTTAAAGCGCACCGCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATT 60099 |||||||||||||| || || |||||||| || ||||| ||||| ||||| || |||| Sbjct 107156 TAGTCAGGGAGTTAAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGAGGATATT 107215 Query 60100 TTTCCGGATGCTCAACCGCGTCCAGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGT 60159 | || ||||| || | ||| || ||||| |||| || || ||||| |||||||||| Sbjct 107216 TCTCAGGATGTTCCATCGCATCGAGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGT 107275 Query 60160 GCTGACCGCCTTCAAT 60175 ||||||| ||||| || Sbjct 107276 GCTGACCACCTTCGAT 107291 >seq974 Length=31311 Score = 154 bits (170), Expect = 2e-32 Identities = 278/404 (69%), Gaps = 2/404 (0%) Strand=Plus/Plus Query 141297 TCTACACCTTTGTTGTTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGA 141356 || ||||| |||||| || || || || ||| |||| ||||||| |||||| || || Sbjct 1 TCAACACCACGGTTGTTTTTCAGGACCAGCAGGCTTTCCACTTCCAGGTGCCACATAGGG 60 Query 141357 TAGTACAGTGTCGCCGCGCCACCACGGACTCCACCTTGGGAGCAGGATTTAACTGCTGTT 141416 ||| |||| ||||| || || || || || || || || ||||||||||| || || || Sbjct 61 TAGAACAGGGTCGCAGCACCGCCGCGCACGCCGCCCTGAGAGCAGGATTTTACCGCCGTC 120 Query 141417 TGGAAGTGTTTCCAGAAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAATTTTT 141476 |||||||| || |||| || ||| || || || |||||||| | ||| Sbjct 121 TGGAAGTGCTTATAGAACGGGATACAGCCGGTGTGGAATGCTTCACCGCCGCGAATCGGG 180 Query 141477 GAACCCTCGGCGCGAATCATGCCTGCATTAATACCAATACCTGCACGCTTACTGATGTAT 141536 ||| || || || || || || || || ||||| ||||||| | |||| Sbjct 181 CTGCCCAGCGCACGGATGCGACCGGCGTTGATGCCGATACCGGCACGCTGGGAAACGTAT 240 Query 141537 TTCGTAATTGATGCAGCA-GCTTCGTTAATTGAATTAAGACTATCACCACCTTCAATAAC 141595 ||| | || || | | | |||| || |||| || || ||||||| || || | Sbjct 241 TTCACGA-TGGCGCTGGACGTGGCGTTGATGGAATCCAGGCTGTCACCACACTCGATCAG 299 Query 141596 CACGCATGAACTGAACTGGCGTGTCGGAGTACGAACACCAGACATAATTGGTGTTGGCAA 141655 ||||| || |||||||| || || || || || || |||||||| ||||| || |||| Sbjct 300 TACGCAGGAGCTGAACTGACGGGTTGGGGTGCGCACGCCAGACATGATTGGCGTAGGCAG 359 Query 141656 TGAAATCTTTTTAGTAGAAACTGCATCATAGAAACGAATAACGT 141699 |||||||| || || || ||||| |||||||| | |||| Sbjct 360 AGAAATCTTGAACGTCGATACCGCATCGTAGAAACGCTTCACGT 403 >seq895 Length=39754 Score = 114 bits (126), Expect = 1e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 60028 GCTGCTGTTCTGGTGTCAGGGAGTTAAAGCGCACCGCGTAGCCGGAAACACGAATGGTAA 60087 ||||||| || | ||||||| ||||| |||||||| ||||| || || || ||||| | Sbjct 11905 GCTGCTGCTCGCGCGTCAGGGCATTAAACCGCACCGCATAGCCCGAGACGCGGATGGTCA 11964 Query 60088 GCTGCGGGTATTTTTCCGGATGCTCAACCGCGTCCAGCAGAGTTTCGCGACGCAGCACGT 60147 | | |||||| || || |||||| ||| || || || || | || || || ||||| Sbjct 11965 GGTTCGGGTAGTTCTCGGGATGCGCAATGGCATCGAGGAGCATCTCCCGGTTCATCACGT 12024 Query 60148 TAACGTTCAGGTGCTGACCGCCTTCAAT 60175 |||||||||||||||| ||||| ||||| Sbjct 12025 TAACGTTCAGGTGCTGCCCGCCCTCAAT 12052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538330327671680