Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02]
1,794 sequences; 393,470,562 total letters
Query= NC_031095.1
Length=168758
Score E
Sequences producing significant alignments: (Bits) Value
seq236 208 8e-49
seq637 136 4e-27
seq895 100 3e-16
>seq236
Length=545527
Score = 208 bits (230), Expect = 8e-49
Identities = 150/173 (87%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 47305 GAAGGCGGTCAGCACCTGAACGTTAACGTGTTGCGTCGCGAAACCTTGCTGGATGCGGTT 47364
||||| ||||||||||| ||||| ||||| |||| |||||||| || |||| ||||||
Sbjct 30713 GAAGGTGGTCAGCACCTTAACGTAAACGTACTGCGCCGCGAAACGCTGATGGACGCGGTT 30772
Query 47365 GAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCCGGATACGCGGTGCGCTTC 47424
||||||||||||||||||||||||||||| |||||||| || || || ||||| ||||||
Sbjct 30773 GAGCACCCAGAAAAATACCCGCAGCTGACCATTCGCGTGTCTGGTTATGCGGTACGCTTC 30832
Query 47425 AACTCCTTGACACCAGAACAGCAGCGCGACGTTATCGCTCGTACTTTCACAGA 47477
||||| |||| |||||||||||||||||||||||||| ||||| || || ||
Sbjct 30833 AACTCTCTGACCCCAGAACAGCAGCGCGACGTTATCGCGCGTACCTTTACTGA 30885
>seq637
Length=122170
Score = 136 bits (150), Expect = 4e-27
Identities = 134/173 (77%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 47302 ATTGAAGGCGGTCAGCACCTGAACGTTAACGTGTTGCGTCGCGAAACCTTGCTGGATGCG 47361
|| ||||| ||||||||||||||||| ||||| || || |||| |||| ||||||
Sbjct 107291 ATCGAAGGTGGTCAGCACCTGAACGTGAACGTAATGAACCGTGAAATGCTGCTCGATGCG 107232
Query 47362 GTTGAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCCGGATACGCGGTGCGC 47421
| || || || || ||||| || |||||||| || || || || || ||||| || ||
Sbjct 107231 ATGGAACATCCTGAGAAATATCCTCAGCTGACCATCCGTGTATCTGGCTACGCAGTACGT 107172
Query 47422 TTCAACTCCTTGACACCAGAACAGCAGCGCGACGTTATCGCTCGTACTTTCAC 47474
|| |||||| |||| ||||||||||| ||||||||| | |||||||||||
Sbjct 107171 TTTAACTCCCTGACTAAAGAACAGCAGCAGGACGTTATCACCCGTACTTTCAC 107119
>seq895
Length=39754
Score = 100 bits (110), Expect = 3e-16
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 47302 ATTGAAGGCGGTCAGCACCTGAACGTTAACGTGTTGCGTCGCGAAACCTTGCTGGATGCG 47361
||||| ||||| ||||||||||||||||||||| || || || | | || |||||
Sbjct 12052 ATTGAGGGCGGGCAGCACCTGAACGTTAACGTGATGAACCGGGAGATGCTCCTCGATGCC 11993
Query 47362 GTTGAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCCGGATACGCGGTGCGC 47421
||| ||| || || || |||||| | ||||| || ||||| || || || ||||||||
Sbjct 11992 ATTGCGCATCCCGAGAACTACCCGAACCTGACCATCCGCGTCTCGGGCTATGCGGTGCGG 11933
Query 47422 TTCAACTCCTTGACACCAGAACAGCAGC 47449
|| || || |||| | || |||||||
Sbjct 11932 TTTAATGCCCTGACGCGCGAGCAGCAGC 11905
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 539885492796320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |