Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_031095.1 Length=168758 Score E Sequences producing significant alignments: (Bits) Value seq236 208 8e-49 seq637 136 4e-27 seq895 100 3e-16 >seq236 Length=545527 Score = 208 bits (230), Expect = 8e-49 Identities = 150/173 (87%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 47305 GAAGGCGGTCAGCACCTGAACGTTAACGTGTTGCGTCGCGAAACCTTGCTGGATGCGGTT 47364 ||||| ||||||||||| ||||| ||||| |||| |||||||| || |||| |||||| Sbjct 30713 GAAGGTGGTCAGCACCTTAACGTAAACGTACTGCGCCGCGAAACGCTGATGGACGCGGTT 30772 Query 47365 GAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCCGGATACGCGGTGCGCTTC 47424 ||||||||||||||||||||||||||||| |||||||| || || || ||||| |||||| Sbjct 30773 GAGCACCCAGAAAAATACCCGCAGCTGACCATTCGCGTGTCTGGTTATGCGGTACGCTTC 30832 Query 47425 AACTCCTTGACACCAGAACAGCAGCGCGACGTTATCGCTCGTACTTTCACAGA 47477 ||||| |||| |||||||||||||||||||||||||| ||||| || || || Sbjct 30833 AACTCTCTGACCCCAGAACAGCAGCGCGACGTTATCGCGCGTACCTTTACTGA 30885 >seq637 Length=122170 Score = 136 bits (150), Expect = 4e-27 Identities = 134/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 47302 ATTGAAGGCGGTCAGCACCTGAACGTTAACGTGTTGCGTCGCGAAACCTTGCTGGATGCG 47361 || ||||| ||||||||||||||||| ||||| || || |||| |||| |||||| Sbjct 107291 ATCGAAGGTGGTCAGCACCTGAACGTGAACGTAATGAACCGTGAAATGCTGCTCGATGCG 107232 Query 47362 GTTGAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCCGGATACGCGGTGCGC 47421 | || || || || ||||| || |||||||| || || || || || ||||| || || Sbjct 107231 ATGGAACATCCTGAGAAATATCCTCAGCTGACCATCCGTGTATCTGGCTACGCAGTACGT 107172 Query 47422 TTCAACTCCTTGACACCAGAACAGCAGCGCGACGTTATCGCTCGTACTTTCAC 47474 || |||||| |||| ||||||||||| ||||||||| | ||||||||||| Sbjct 107171 TTTAACTCCCTGACTAAAGAACAGCAGCAGGACGTTATCACCCGTACTTTCAC 107119 >seq895 Length=39754 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 47302 ATTGAAGGCGGTCAGCACCTGAACGTTAACGTGTTGCGTCGCGAAACCTTGCTGGATGCG 47361 ||||| ||||| ||||||||||||||||||||| || || || | | || ||||| Sbjct 12052 ATTGAGGGCGGGCAGCACCTGAACGTTAACGTGATGAACCGGGAGATGCTCCTCGATGCC 11993 Query 47362 GTTGAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCCGGATACGCGGTGCGC 47421 ||| ||| || || || |||||| | ||||| || ||||| || || || |||||||| Sbjct 11992 ATTGCGCATCCCGAGAACTACCCGAACCTGACCATCCGCGTCTCGGGCTATGCGGTGCGG 11933 Query 47422 TTCAACTCCTTGACACCAGAACAGCAGC 47449 || || || |||| | || ||||||| Sbjct 11932 TTTAATGCCCTGACGCGCGAGCAGCAGC 11905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539885492796320