Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq754 183 5e-41 >seq754 Length=71200 Score = 183 bits (202), Expect = 5e-41 Identities = 222/300 (74%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 201788 ACCATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTA-AAAGC 201846 ||||||||||| ||||| || || || | || | ||| | ||| | | ||| Sbjct 66013 ACCATGAAACAGTATCTTGAATTGATGAAAAAAGTGCTCGATGA-GGGCACGCCGAAAAA 66071 Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACA 201906 |||||||||||| || || || ||||| |||| || | |||||||||||| || ||||| Sbjct 66072 CGACCGTACCGGCACCGGTACGCTCTCCATTTTTGGCCACCAGATGCGCTTCAATTTACA 66131 Query 201907 AGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCT 201966 ||||| || || ||||| || || || || || || || ||||| ||||| || Sbjct 66132 GGAAGGCTTCCCTCTGGTGACGACTAAGCGCTGCCATCTGCGCTCGATCATTCATGAACT 66191 Query 201967 GCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCAT 202026 ||| |||||||| || || |||||| | |||| || | || ||||||||| |||| Sbjct 66192 GCTCTGGTTCCTGCAAGGCGATACCAACGTTGCGTATCTGCACGAAAACAACGTCTCCAT 66251 Query 202027 CTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086 ||||||||||||||| ||| ||||||| || | |||||||| ||||| ||||| ||||| Sbjct 66252 CTGGGACGAATGGGCAGATGAAAACGGCAACCTGGGCCCGGTTTACGGCAAGCAGTGGCG 66311 Score = 125 bits (138), Expect = 1e-23 Identities = 219/319 (69%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 202490 CTTTCTTGTCAGCTCTATCAGCGTAGTGCGGACATGTTCCTTGGCGTACCGTTTAACATC 202549 || || || |||||||| |||||| || ||||||| ||| | ||||||||||| Sbjct 66490 CTCTCCTGCCAGCTCTACCAGCGTTCCTGTGATGTGTTCCTCGGCCTGCCGTTTAACATT 66549 Query 202550 GCGTCTTACGCCTTGCTGGTACACATGTTTGCACAACAGGCGAACATGGCGGTAGGCGAC 202609 || || || || | || || ||| | || || ||| || ||| || || || Sbjct 66550 GCCAGCTATGCGCTGTTAGTCCATATGATGGCGCAGCAGTGTGACCTGGAAGTGGGGGAT 66609 Query 202610 TTCGTCTGGACAGGTGGTGATACGCATCTGTACTCCAACCATCTGGAACAAGCTGACCTC 202669 || |||||||| ||||| || || ||||| ||| ||||||| |||| || | | ||| Sbjct 66610 TTTGTCTGGACCGGTGGGGACACCCATCTCTACAGCAACCATATGGAGCAGACCCATCTC 66669 Query 202670 CAACTTACCCGTGACCCTAAACCGTTACCGAAGTTGGTTATCAAACGTAAGCCCGATTCC 202729 || || ||||| || || || | |||||| | | ||||| || || || | || Sbjct 66670 CAGCTGACCCGCGAACCGCGCGCGCTGCCGAAGCTCATCATCAAGCGCAAACCGGCGTCA 66729 Query 202730 ATCTTCGACTACAAATTCGAAGACTTCGAGGTTGTCGATTACATTTCGCATCCGGCGATT 202789 ||||| |||||| ||||| || || ||| ||| | ||| |||| || | || Sbjct 66730 ATCTTTGACTACCGCTTCGATGATTTTGAGATTGAGGGCTACGACCCGCACCCTGGCATC 66789 Query 202790 AAAGCGCCCGTCGCGATCT 202808 |||||||||||||| |||| Sbjct 66790 AAAGCGCCCGTCGCTATCT 66808 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 202205 ATTGACCAAATCGCCAAAGTGGTTGACCAGCTGCGTAATGACCCCGACAACCGTCGTATT 202264 |||||||| ||| ||| ||| | |||||||| || || || ||| || || || Sbjct 66340 ATTGACCAGATCACCACCGTGATGAACCAGCTGAAAAACGATCCAGACTCGCGCCGAATC 66399 Query 202265 ATTGTCAGCGCCTGGAACGTGGCAGAGCTAGACGAGATGGCCTTGGCCCCGTGTCATGCG 202324 ||||| |||||||||||| | ||||| ||| | ||||| |||| ||||| || ||| Sbjct 66400 ATTGTTTCCGCCTGGAACGTCGGCGAGCTGGACAAAATGGCGCTGGCACCGTGCCACGCG 66459 Query 202325 TTCTTCCAGTTCTAC 202339 ||||||||||||||| Sbjct 66460 TTCTTCCAGTTCTAC 66474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787985529028240