Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_031117.1 Length=44885 Score E Sequences producing significant alignments: (Bits) Value seq1230 188 2e-43 >seq1230 Length=13776 Score = 188 bits (208), Expect = 2e-43 Identities = 406/598 (68%), Gaps = 23/598 (4%) Strand=Plus/Plus Query 34323 AAAAATCAAAGGTGCTGTATGAAAAAG---CGGAATAAAAAATACAACGGGAAGCAGGTT 34379 |||| | || || || | |||||||| || ||||| ||||| ||| |||||| Sbjct 3641 AAAAGTGAAGGGGGCAGCATGAAAAAATCACGCAATAAGAAATATAACCCCCGTCAGGTT 3700 Query 34380 GTAAAGCAGAAGATTCACAAGTTTCAAATGACTTGGGAGGTTAATGAGGCTAAAAGCATT 34439 || || |||| ||||| || ||| |||||| ||||| || ||| | || Sbjct 3701 CGGCTTCAAAAAGTTCATAAGTTCCAGATGTTTTGGGAAACGAATGAAGCCAAACGGATC 3760 Query 34440 ATCGAGCTTCATCACTTGCTTAATGGTGTTGATCCGCAAGAGTCTACTCATACACCGCTT 34499 || || || ||||| ||||| ||||||| ||| | ||| || |||| ||| Sbjct 3761 ATAGAACTGCATCATTTGCTGAATGGTGAAGATTGTGATGAGGAAACGTTCTCACCACTT 3820 Query 34500 AAAGTTTGGATGAAGGCGCATAAAGGTGATCTAGCTTTAGCATTAAAGACGCAGACGATA 34559 || || ||||||||||| |||||||| |||||||| | ||| | || | ||||| || Sbjct 3821 AATGTATGGATGAAGGCTCATAAAGGAGATCTAGCACTTGCACTTAAATCCCAGACCATT 3880 Query 34560 CC-AGCAGAGCAAAGTTTTCATATTGTTAGTCGAATTCATGCGGTTAATGAGAAAACAGG 34618 || |||| | |||||||||||||| ||| |||| | ||||| || | || |||| || Sbjct 3881 CCGAGCA-AACAAAGTTTTCATATCGTTTGTCGTGTGCATGCTGTACAGGATCAAACTGG 3939 Query 34619 CGAAACGGTTGACTGTGAATTTCAATTAGC---TAC-----CGATACCGTTA--TGCATT 34668 |||| || ||| ||| |||||| | || | | ||| | ||| || || Sbjct 3940 TGAAATCGTCGACACTGAGTTTCAACTTGCATGTCCACAGTTGATGACCTTAATTGAGTT 3999 Query 34669 TGTGGCAGTTCTTAGGTGATGTTGAGTCTGATATTTATGTCAATGACGGCGGTTTTAAAA 34728 | || | | || | || | | || | ||||| ||||||| || || |||||||||| Sbjct 4000 TTTGTCTGGTCAGA-GTCACGATGGG---GATATCTATGTCATGGATGGTGGTTTTAAAA 4055 Query 34729 AGAAATGGCTTGGCTTTAATCATGAGCT--TGAAGCTTATTTGAAAGAGGTTGGCAATGG 34786 ||| |||| |||||| || | || | ||||| |||||||| || || || || Sbjct 4056 AGAGATGGGAGGGCTTTGATGAGGAATTAGTGAAG--TATTTGAATGATGTAGGAGATCA 4113 Query 34787 TGAATTTGTGGTTAAGACTAATCACTGTTGCTTGACATGCTTTTCAACATTCAAAAGCTT 34846 | | | ||||| | ||||| || | ||||||||||| ||||| ||||| || Sbjct 4114 GACCTATCACATCAAGACCATACACTGCTGTCTCACATGCTTTTCGACATTTAAAAGTTT 4173 Query 34847 TAGGCATGAAATGGAATTCAAATCAATTAAGTTAATGAATCCTGAATTTGGATTAGGA 34904 | | ||||| | || || ||| | | ||| |||||||||| |||| |||||| ||| Sbjct 4174 TCAGGATGAACTAGAGTTTAAAACGCTCAAGCTAATGAATCCAGAATATGGATTGGGA 4231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143507342690316