Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq813 486 1e-132 seq651 134 9e-27 >seq813 Length=55966 Score = 486 bits (538), Expect = 1e-132 Identities = 554/744 (74%), Gaps = 0/744 (0%) Strand=Plus/Plus Query 96691 AGCACCAGCATAGTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCC 96750 || ||| |||||||| || || || || | ||||||||||| | || | |||||| || Sbjct 22710 AGGACCGGCATAGTTGTCGAAACGCGACCACTGGCCGTTAAAGGTCAGACGCACCGTCCC 22769 Query 96751 AATTGGGCCATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTATC 96810 || ||||| || ||||| || || ||||| | ||||| || || |||| ||||| | Sbjct 22770 GATCGGGCCGTTACGTTGTTTACCAATAATAATTTCGGCGATCCCTTTCAGGTCGCTGTT 22829 Query 96811 CGGGTGATAAACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGC 96870 | ||||||||| || || || || | ||||||||| | ||| || |||||||| || | Sbjct 22830 CTCGTGATAAACCTCATCACGGTAGATAAACATGATTAAGTCGGCATCCTGCTCGATCGA 22889 Query 96871 TCCTGATTCACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGATCG 96930 || |||||||| | || || || ||||| |||||||| ||||| ||||| || || || Sbjct 22890 GCCGGATTCACGCAGGTCGGAGTTGACCGGACGTTTGTCGGCACGTTGTTCCAGAGAGCG 22949 Query 96931 ATTAAGTTGTGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGA 96990 ||||| || |||| ||||||||||| || || | || || || |||||||| || || Sbjct 22950 GTTAAGCTGCGACAGCGCCACCACCGGCACGTGCAGCTCTTTGGCTAACGCCTTGAGCGA 23009 Query 96991 GCGAGAAATCTCGGCAATTTCCAGCGTTCGGTTATCTTGCAGCTCCGGGACGCGCATAAG 97050 ||| ||||| ||||| || |||||||| ||||| || ||| |||||||||||| || Sbjct 23010 GCGGGAAATTTCGGCGATCTCCAGCGTACGGTTGTCGGAGAGCGACGGGACGCGCATCAG 23069 Query 97051 TTGCAGGTAGTCGATCATAATCATGCTCAAACCACCATTTTCTTTATAAACACGACGAGC 97110 || |||||||||||||| || | || | ||| || | ||| | |||||| || Sbjct 23070 CTGAAGGTAGTCGATCATGATAAGGCCGATACCGCCGTGTTCGCGGGCGATACGACGCGC 23129 Query 97111 GCGGGAACGTAGCTCTGTCGGCGTCAGGGCGCTTGAGTCATCAATAAAAATATTCTGCTT 97170 ||||||||| | || |||||||||||| || |||||||||||| | || || | || Sbjct 23130 GCGGGAACGGACTTCCGTCGGCGTCAGGCCGGAGGAGTCATCAATATAGATGTTACGTTT 23189 Query 97171 GTCCAACAGAATACCCATTGCGCCAGAAACCCGCGCCCAATCCTCGTCGTTAAGTTGCCC 97230 |||| |||||| ||||| | ||| || | |||||||| ||||| |||| || || || Sbjct 23190 TTCCAGCAGAATGCCCATGGTGCCGGAGATGCGCGCCCAGTCCTCATCGTCGAGCTGACC 23249 Query 97231 TGTTCGAATACGAGTCTGATCAACGCGTGCAAGAGAAGCCAGTGAGCGCATCATCAGCTG 97290 || || || || ||||| || ||||| | || || ||||| || |||||||| | ||| Sbjct 23250 GGTACGGATGCGGGTCTGGTCCACGCGCGACAGCGATGCCAGAGAACGCATCATGATCTG 23309 Query 97291 GTGGCTCGGCATCTCAAGGCTAAAAACCAATACGGGCTTATCGTTACGAACTGCGGCATT 97350 | | |||||||||||||| |||| || ||| |||||||| | | || ||||| Sbjct 23310 CTCGGAGGGCATCTCAAGGCTGAAAATCAGTACCGGCTTATCCTGCAACATCGCCGCATT 23369 Query 97351 TTCGACGAGATTCATCGCAAACGTGGTCTTCCCCATAGATGGGCGGGCGGCGACAATGAT 97410 ||||||||| ||||||||||| || || || ||||| || || || |||||||| || || Sbjct 23370 TTCGACGAGGTTCATCGCAAATGTCGTTTTACCCATCGACGGACGCGCGGCGACGATAAT 23429 Query 97411 GAGATCGGACGACTGAAGCCCTGC 97434 | ||| |||| ||| || || || Sbjct 23430 CAAATCCGACGGCTGCAGACCGGC 23453 Score = 132 bits (146), Expect = 3e-26 Identities = 230/332 (69%), Gaps = 2/332 (1%) Strand=Plus/Plus Query 44707 CGCCGATCATTTGCATGGTGCCGCCCTGGCTGACGATAATTTCCGTCGTGTAACGTTCTA 44766 |||| | ||| |||||||| ||||| | | || | || ||| || ||||| || Sbjct 13441 CGCCCAGCATCTGCATGGTACCGCCAACGTTTACCACAACTTCGGTGGTGTACTTCTCAG 13500 Query 44767 CACCGGCGTCATCTGTCCACTTACGGGTTTTAAGTTTCCCTTCGATGTAGACCTGAGAAC 44826 | |||| | ||| ||||| |||||||| |||| |||||||| ||||||||||||| Sbjct 13501 CGCCGGACTGATCGGTCCATTTACGGGTGCGCAGTTGGCCTTCGATATAGACCTGAGAAC 13560 Query 44827 CTTTTCGTAAATACTCACTCGCAATTTCAGCAAGTTTTCCGAACAAAACGACTTTATGCC 44886 |||| || | |||||||| |||| ||| || ||||| || |||| || || |||| Sbjct 13561 CTTTACGCAGATACTCACCGGCAACTTCTGCCAGTTTGCCAAACAGCACCACGCGGTGCC 13620 Query 44887 ATTCTGTTTGCTCTTTCTGTTGGCCCGTTTGCTTGTCGCGCCATGATTCATTCGTTGCGA 44946 |||| || ||||||||| | || || || || ||||| ||||| || || | Sbjct 13621 ATTCAGTCTGCTCTTTCATCTCACCGGTCGCTTTATCACGCCAGGATTCGGAAGTAGCCA 13680 Query 44947 TGCTGAGTCTT-CCGACCGCTCCGCCATTTGGTATATACCTGATCTCCGGGTCTTGCCCC 45005 || | | || | || || || ||| | || || || | | |||||||| || ||| Sbjct 13681 -GCGTAATGTTGGCAACTGCGCCACCACTCGGCATGTAGCGTACTTCCGGGTCCTGGCCC 13739 Query 45006 AGGGTACCAATCAGGATGACTTTGTTTACACC 45037 || |||| | || || || |||||||| || Sbjct 13740 AGATTACCGACGAGAATCACCTTGTTTACGCC 13771 >seq651 Length=115633 Score = 134 bits (148), Expect = 9e-27 Identities = 290/429 (68%), Gaps = 6/429 (1%) Strand=Plus/Plus Query 102855 GGTCAACAGGAAGAAATCTGCGTCCAGTCGCTGCGCAACATCTTCACTATCAATATCAGA 102914 ||||| ||||| ||| || ||||| | ||||| || |||||| || || ||||| Sbjct 27855 GGTCATCAGGATGAAGTCCGCGTCGAAACGCTGGGCGTAATCTTCCCTGTCGATATCTTC 27914 Query 102915 ATTCTGCTCAAGCAATTCATCCGCA-AATTT--GACGCTGGTAAGGCTGAAGTTATGGTC 102971 ||||| || ||| || || ||| || || |||||| | | | | || | | Sbjct 27915 GTTCTGATCGCGCAGCTCGTC-GCAGAACTTCAGACGCT--TCACGGAGCCGTCGTCGCA 27971 Query 102972 CAGTGTAAATTTAATGCGGTTCTGCCAGTCGAGTGCCAACTTAGTGACGAGCTTGCCAGC 103031 || || | ||| || | |||||||||||| |||| ||| ||||| | ||||| || Sbjct 27972 CATCACGAACTGAATACGCTGCTGCCAGTCGAGCGCCAGCTTGGTGACCACTTTGCCCGC 28031 Query 103032 TTCCAGGTGTGTGGATATTTCATCACTTCCCAAGTCCTGCTTTTTCACTCGGGCAATACC 103091 ||| | ||| || ||||| || || ||| |||||||| ||| | ||| | || Sbjct 28032 TTCGATGTGGACGGCGATTTCGTCGCTCACCAGATCCTGCTTCTTCGCGCGGATCACGCC 28091 Query 103092 GCCATCCTCAAGCACTGCCTTAAGTTCTGCCGCATCCCCCATTTGAAATCCCTGTGGAGC 103151 |||||| || |||| || || || || || |||| || || || ||||| | || Sbjct 28092 GCCATCTTCCAGCAGGGCTTTCAGCTCGGCTTCATCAAGGATCTGGAAACCCTGAGCCGC 28151 Query 103152 ACTACCATCACGTACCCAGTCGGTCAGCGTTAATTCAATGGGATTTTCAACACTCAGGGG 103211 | ||| |||||||| |||||||||||||| ||||| || |||| | ||| || Sbjct 28152 AGCACCGCTGCGTACCCATTCGGTCAGCGTTAACTCAATTGGCGTTTCCAGCGCCAGCGG 28211 Query 103212 AACAACAGGAAGAGAACCCAGAGACTTACGCATAAGCGCGAGCATATCCTCTGCCTGCCG 103271 ||| || || | || || | |||||||| || || ||| |||| ||||| | | Sbjct 28212 AACGACCGGTAACGAGCCGATGCTCTTACGCAGCAGGGCCAGCGTATCTTCTGCTTTCTT 28271 Query 103272 CGCGCTGGC 103280 |||||||| Sbjct 28272 GGCGCTGGC 28280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330891965095804