Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq197 152 1e-31 seq1030 138 3e-27 >seq197 Length=620651 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||||||| || |||||||| || || |||||||| |||| || || | ||||| ||| Sbjct 448381 ACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGACAAGGTGCGACCATCCTCT 448440 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || ||||||||||| | |||||||||||| | | ||||| || || ||||| Sbjct 448441 AGCTGGTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCTTGG 448500 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || ||||||| |||| | | |||||||| || ||||| ||||| || || || Sbjct 448501 ATCTTGGCTTTGACATTCTCAATGATGTCTGAAGCTTCAACTTCCAGAGTGATGGTCTTT 448560 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| |||||||| || |||| |||||| Sbjct 448561 CCCGTCAGAGTCTTGACAAAGATCTGCAT 448589 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||||||||| |||||||| || ||||||||||| || | ||| || | || |||||| Sbjct 446496 ACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGGCCGTCTTCT 446555 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || || |||||||| || | ||||||||||| | || |||||||| ||||| Sbjct 446556 AGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCTTGG 446615 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || || ||| |||| | | |||||||| || ||||| || || || || ||| Sbjct 446616 ATCTTAGCCTTTACATTCTCGATGGTGTCTGAAGCTTCGACTTCTAGGGTGATGGTCTTG 446675 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| | |||||| Sbjct 446676 CCAGTCAGGGTTTTCACGAAAATCTGCAT 446704 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||||||||| |||||||| || ||||||||||| || | ||| || | || |||||| Sbjct 448124 ACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGATAAGGTGCGGCCGTCTTCT 448183 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || || |||||||| || | ||||||||||| | || |||||||| ||||| Sbjct 448184 AGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCTTGG 448243 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || || ||| |||| | | |||||||| || ||||| || || || || ||| Sbjct 448244 ATCTTAGCCTTTACATTCTCGATGGTGTCTGAAGCTTCGACTTCCAGGGTGATGGTCTTG 448303 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| | |||||| Sbjct 448304 CCAGTCAGGGTTTTCACGAAAATCTGCAT 448332 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| |||||||| ||||| || || || | || || | || ||||||| Sbjct 446726 CAAG-TGAAGAGTCGACTCTTTCTGGATATTATAGTCTGACAATGTACGGCCGTCTTCTA 446784 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| |||||||||||||| | ||||||||| | | ||| |||||||| ||||| | Sbjct 446785 GTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCTTGGA 446844 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | |||||||| || ||||| ||||| || || |||| Sbjct 446845 TCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCAACTTCCAGAGTGATTGTCTTGC 446904 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || |||||||| | |||||| Sbjct 446905 CAGTTAGGGTTTTCACGAAAATCTGCAT 446932 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||||||| || ||||| ||||| ||||||||||| |||| || || | || ||||| Sbjct 447180 ACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCGTCTTCA 447239 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || || || ||||| | |||||||||||| | | ||||| || || ||||| Sbjct 447240 AGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCTTGG 447299 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || ||||||| |||| | | |||||||| || ||||| ||||| || || ||| Sbjct 447300 ATCTTGGCTTTGACATTCTCGATGGTGTCTGAAGCTTCAACTTCCAGAGTGATGGTCTTG 447359 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| | |||||| Sbjct 447360 CCAGTCAGGGTTTTCACGAAAATCTGCAT 447388 Score = 138 bits (152), Expect = 3e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || |||||||| ||||| || || || | || || | || ||||||| Sbjct 448883 CAAG-TGAAGGGTTGACTCTTTCTGGATATTATAGTCAGACAATGTACGGCCGTCTTCTA 448941 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| |||||||||||||| | ||||||||| | | ||| |||||||| ||||| | Sbjct 448942 GTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCTTGGA 449001 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | |||||||| || ||||| ||||| || || |||| Sbjct 449002 TCTTGGCCTTCACATTCTCGATGGTGTCTGAAGCTTCCACTTCCAGAGTGATTGTCTTGC 449061 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || |||||||| | |||||| Sbjct 449062 CAGTTAGGGTTTTCACGAAAATCTGCAT 449089 Score = 134 bits (148), Expect = 3e-26 Identities = 156/209 (75%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| |||||||||||||| |||| || || | ||||| || | Sbjct 446270 CAAG-TGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCCTCCA 446328 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| ||||||||||| || | ||||||||| | | || || ||||| || || | Sbjct 446329 GCTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGA 446388 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | |||| ||| || ||||| ||||| || || || | Sbjct 446389 TCTTGGCCTTTACATTCTCGATGGTGTCCGAAGCTTCAACTTCCAGAGTGATGGTCTTTC 446448 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||| |||||||||||||| | ||||||| Sbjct 446449 CCGTCAGAGTCTTCACGAAAATCTGCATT 446477 Score = 134 bits (148), Expect = 3e-26 Identities = 156/209 (75%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| ||||| || || |||||||| |||| || || | |||||||||| Sbjct 447898 CAAG-TGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGATAGGGTGCGGCCATCTTCTA 447956 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| || | ||||||||| | | ||| || ||||| || || | Sbjct 447957 GTTGCTTACCAGCGAAGATCAGACGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGA 448016 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | | |||| ||| || ||||| ||||| || || || | Sbjct 448017 TCTTGGCCTTTACATTCTCGATGGTGTCCGAAGCTTCAACTTCCAGAGTGATGGTCTTTC 448076 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||| |||||||||||||| | ||||||| Sbjct 448077 CCGTCAGAGTCTTCACGAAAATCTGCATT 448105 Score = 111 bits (122), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || |||||||| ||||||||||| |||| || || | || ||||| | Sbjct 449586 CAAG-TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCGTCTTCAA 449644 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| || | ||||||||| | || ||| || || || || || | Sbjct 449645 GCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCTTTGTCCTGGA 449704 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || |||| | | |||||| | ||| || || | ||| || ||||| | Sbjct 449705 TCTTCGCCTTAACGTTCTCGATGGTGTCTGCAGGCTCGACCTCCAAAGTGATGGTTTTCC 449764 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || || ||||||||||| | |||||| || Sbjct 449765 CAGTCAGGGTCTTCACGAATATCTGCATGTT 449795 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || |||||||| ||||||||||| || | | || | ||||| || | Sbjct 449358 CAAG-TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCA 449416 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || || ||||| | |||||||||||| | | ||||| || || ||||| | Sbjct 449417 ACTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCTTTGTCTTGGA 449476 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| |||| | ||||||| || ||||| || ||||| || |||| Sbjct 449477 TCTTGGCCTTCACATTCTCAATTGTGTCTGAGGCTTCCACTTCCAGGGTAATTGTCTTGC 449536 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || |||||||| | |||||| Sbjct 449537 CAGTCAGGGTTTTCACGAAAATCTGCAT 449564 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/124 (76%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || |||||||| ||||| || || || | || || | || ||||||| Sbjct 447410 CAAG-TGAAGGGTTGACTCTTTCTGGATATTATAGTCAGACAATGTACGGCCGTCTTCTA 447468 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| |||||||||||||| | ||||||||| | | ||| || ||||| ||||| | Sbjct 447469 GTTGTTTACCGGCGAAGATAAGTCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGA 447528 Query 152017 TTTT 152020 | || Sbjct 447529 TCTT 447532 >seq1030 Length=27445 Score = 138 bits (152), Expect = 3e-27 Identities = 158/211 (75%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| || || ||||||||||| |||| | || | ||||| || | Sbjct 2694 CAAG-TGAAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCCTCCA 2752 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || |||||||| || | ||||||||||| | ||| || ||||| || || | Sbjct 2753 GCTGTTTACCAGCGAAGATCAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGA 2812 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||||| | || | | |||| ||| ||| || ||||| || || || |||| Sbjct 2813 TCTTGGCTTTGACATTTTCGATGGTGTCGGAAGCCTCCACCTCAAGGGTGATGGTCTTGC 2872 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||| || ||||||||||||| |||||| || Sbjct 2873 CCGTAAGGGTCTTCACGAAGATCTGCATATT 2903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153794278707774