Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_031933.1 Length=114180 Score E Sequences producing significant alignments: (Bits) Value seq637 140 2e-28 seq236 93.3 3e-14 >seq637 Length=122170 Score = 140 bits (154), Expect = 2e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 27992 TTATATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAATGC 28051 ||| || | |||||| || ||||| | |||||||| | ||| ||||| |||| | Sbjct 107106 TTACATGGACTGAGTGAAAGTACGGGTGATAACGTCCTGCTGCTGTTCTTTAGTCAGGGA 107165 Query 28052 GTTAAATCGAACAGCATAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATG 28111 |||||| || || || |||||||| ||||||||||||| |||||||||||| |||||||| Sbjct 107166 GTTAAAACGTACTGCGTAGCCAGATACACGGATGGTCAGCTGAGGATATTTCTCAGGATG 107225 Query 28112 TTTCTGCGCATCCAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACC 28171 || | |||||| | ||| |||||| | | || || || || |||||||||||||| Sbjct 107226 TTCCATCGCATCGAGCAGCATTTCACGGTTCATTACGTTCACGTTCAGGTGCTGACCACC 107285 Query 28172 CTCGA 28176 |||| Sbjct 107286 TTCGA 107290 >seq236 Length=545527 Score = 93.3 bits (102), Expect = 3e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 28004 AGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAATGCGTTAAATCGAAC 28063 |||||| ||||| ||||||||| ||| ||||| | |||| | ||| || || || Sbjct 30883 AGTAAAGGTACGCGCGATAACGTCGCGCTGCTGTTCTGGGGTCAGAGAGTTGAAGCGTAC 30824 Query 28064 AGCATAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATC 28123 ||||| ||||| || || ||||||| ||| || |||||||| || || | ||| || Sbjct 30823 CGCATAACCAGACACGCGAATGGTCAGCTGCGGGTATTTTTCTGGGTGCTCAACCGCGTC 30764 Query 28124 CAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCCTCGAC 28177 || ||| || |||| | || || || || |||||||||||||| || || Sbjct 30763 CATCAGCGTTTCGCGGCGCAGTACGTTTACGTTAAGGTGCTGACCACCTTCCAC 30710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 365243214010794