Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq986 820 0.0 seq813 161 3e-35 seq1102 95.1 3e-15 >seq986 Length=30461 Score = 820 bits (908), Expect = 0.0 Identities = 982/1331 (74%), Gaps = 2/1331 (0%) Strand=Plus/Plus Query 20879 TTACGCTTTAATATGTATTTAGGCCGCTGTTTGGTTTCTATGTAAATTCTACCAATATAT 20938 |||| |||||| | ||| |||||| ||| |||| || ||||| || ||||| || Sbjct 11744 TTACCCTTTAACAGGTAGCGAGGCCGTCCCTTGCTTTCGATATAAATCCTTCCAATGTAC 11803 Query 20939 TCTCCAAGAATACCTATTCCTATCAATTGAACGCCACCCAGGAAAAGAACAGAAACAAGA 20998 ||||| || | ||| || || || | ||| || ||||| |||||||| | || ||||| Sbjct 11804 TCTCCGAGCACACCAATGCCGATAAGTTGCACACCACCAAGGAAAAGGATGGAGACAAGT 11863 Query 20999 AGAGACGGGTAGCCAGGAACATTATTTCCAAATATTAATTTATCAATAATCATCCATGCA 21058 | ||||| |||||| | ||| ||| ||||| | | || | |||||||||||| Sbjct 11864 AATGACGGATAGCCACGCACAGCATTGCCAAAAGCCAGAGTGTCTACAATCATCCATGCG 11923 Query 21059 CCGTAAAGGAATGACATACCTGCAATAAACAATCCAATGTAAGTCCATATGCGGAGCGGA 21118 || || || |||| | |||||||| || | || || || ||||| ||||| || || Sbjct 11924 CCATAGAGAAATGCGAGACCTGCAACAACAAGCCCGATATAGGTCCACATGCGCAGAGGG 11983 Query 21119 AATGTTGAGAAAGAAGTTATTCCCTCCAGCGCCAGGTTCCATAATTTCCAGCCGTTGAAT 21178 || || |||||| || || ||||| || || ||||||||||| ||||| || || ||| Sbjct 11984 AAGGTAGAGAAACTGGTGATACCCTCAAGAGCAAGGTTCCATAACTTCCAACCATTAAAT 12043 Query 21179 TTCGAATCACCGGCCACGCGTTCGGCACGGGCATATTTAACAACATCCGTTTTTCCGCCA 21238 || | | || || |||||||| || |||||||||| |||||||||||| || ||| Sbjct 12044 TTTGTACTGCCTGCAACGCGTTCAGCGCGGGCATATTCAACAACATCCGTGCGACCACCA 12103 Query 21239 ACCCAACTGAGCACACCCTTCATAAACAAGTTGCGTTCTGGCATTTGTTTGATGTTCTCG 21298 ||||| || || || |||||||| || | ||| | |||||||| | |||||||| ||| Sbjct 12104 ACCCAGCTCAGAACTCCCTTCATGAAGAGGTTTCTCTCTGGCATGAGCTTGATGTTTTCG 12163 Query 21299 ACAACCGCACGGCTCATTAACCGAAAGTCGCCAACATTTTCTTCGATTTTTGGATTGCTG 21358 || ||| ||||| ||| | || || || || |||||||| ||||| | || || ||| Sbjct 12164 ACCACCTCACGGGACATCAGACGGAAATCACCGACATTTTCCTCGATCTGCGGGTTACTG 12223 Query 21359 ATTTTATTGTGCAGCTTATAAAACCACTCAGCTGTCTTACGCTTCATGCGCCCGTCAGTT 21418 ||||| ||||||| |||||| |||||||| || | ||||| |||| || | ||||| Sbjct 12224 ATTTTGTTGTGCAACTTATAGAACCACTCGGCAGATTTACGTTTCAGACGACTATCAGTG 12283 Query 21419 GAGCGGTCTGAGCGCTTAGCCAGCACCATATCCGCGCCAGCCTGCCACTTCTCAATGAGA 21478 |||||||| |||||||| ||||| ||||| || || || |||||||| ||||| || ||| Sbjct 12284 GAGCGGTCAGAGCGCTTGGCCAGTACCATGTCGGCCCCGGCCTGCCATTTCTCTATCAGA 12343 Query 21479 TGAGGGATAACTTCTATCGGATCCTGTAAATCGACATCAATAGGAATGACCGCATCCCCG 21538 || || || || || || || ||||| || || || ||||| || || | || || || Sbjct 12344 TGCGGAATGACCTCAATTGGGTCCTGCAAGTCTACGTCAATCGGGATAATTGCTTCACCT 12403 Query 21539 GTTGCATGGTCGAGACCCGCGAAAAGAGCAGGTTCTTTACCGAAGTTTCGCGTAAACGAA 21598 || || ||||| || || ||||| | |||||| ||||| || ||||| || || || ||| Sbjct 12404 GTAGCGTGGTCTAGGCCGGCGAATAAAGCAGGCTCTTTTCCAAAGTTGCGGGTGAAGGAA 12463 Query 21599 AGCGGAATAACGAGCGGATCAGATGCAGCTATTTTGTTAATTATTGATTCAGTCGCATCT 21658 || |||| || |||||||| | ||| | ||| || |||||||| ||||||||| Sbjct 12464 AGAGGAACCACAAGCGGATCTGCAATAGCAAGCGCGTTTATAATTGATTCGGTCGCATCT 12523 Query 21659 TTACTACCATCATTAATAAAAACGATCTCAATTTCATATTCTTTTAGCTCATTAAACTCA 21718 || ||||| ||||| || || || ||||||| ||| | | |||| | | | |||||| Sbjct 12524 TTGCTACCGTCATTGATGAAGACTATCTCAACTTCCTGCTGCTTTAACCCTTCAAACTCC 12583 Query 21719 CGTACCGTTTTATAGAAAATCGGTATCGTGTCTTCTTCGTTAAAAACTGGAACGACAAGA 21778 || || | ||| ||||| || || || | || ||||| ||||| || |||||||| ||| Sbjct 12584 CGCACGGCTTTGTAGAAGATTGGAATTGCTTCCTCTTCATTAAACACCGGAACGACCAGA 12643 Query 21779 GAGATTTTCATCTTATATCCCTGAAAACAATGAATCTGGAATAGATAAAGCCGCATACCA 21838 || |||||||| | |||||| || |||||||| | |||||||| |||||||| |||| Sbjct 12644 GAAATTTTCATTTCGCATCCCTAAAGACAATGAACTTTGAATAGATGAAGCCGCACACCA 12703 Query 21839 GGCTAATTGCCGAGAAAGTGATAAGGGTAATCAATGGTGGCAAG-GAACATTGGTCAGCC 21897 | || || || |||||| ||| | ||||| ||| | |||||| ||| |||||| Sbjct 12704 GACTGATGGCGGAGAAAACGATTAACGTAAT-AATCGGGGCAAGCCCTGATTTGTCAGCA 12762 Query 21898 ATCCAGCCAACAACAGCGCTCAGTGTTCCCATGAATCCCACATACATCATGTAGCGAAGC 21957 ||| ||||| | |||||||| || ||||| || || ||||||| ||||||||| | Sbjct 12763 CACCAACCAACGGCGGCGCTCAGCGTACCCATAAACCCTACATACAGCATGTAGCGCATG 12822 Query 21958 GTGGTGGTGGTGGCATTAAAGGTGAAACGCGCATTGGCATAGAAGCTGAACGATACGGCG 22017 || || || | | ||||||||||| | || || || | ||||| || || || || Sbjct 12823 GTCGTTGTAGAAGACTTAAAGGTGAACCTGGCGTTTGCGAAAAAGCTAAATGACACCGCA 12882 Query 22018 ATAACAAAACCGGAAAAGTTCGCCAGCGCCTGATGCGTATGCATCCCATACACACAAAAA 22077 | ||||| |||| ||||| ||||| || || || || | | || | | ||| Sbjct 12883 ACTACAAATCCGGCGAAGTTAGCCAGAGCTTGCCCTGTGTGGAAGACGTAAATAGAAATG 12942 Query 22078 GCAAATACGCCCCAATGAATAAGCGTGTTAAGAACACCGATCGATGTGTACTTAGCGAAT 22137 || || || |||| ||||| |||||||| | |||||| || ||||||||| | |||||| Sbjct 12943 GCGAACACAACCCAGTGAATGAGCGTGTTGATAACACCTATTGATGTGTACCTGGCGAAT 13002 Query 22138 AACTTCAACATTATGAAAATCAGCGGATTCGGAAAGGTCTGAAGTGTAGCACTACAAATT 22197 ||||| |||||||| ||||||| | ||||||||||||||||||||||||| ||| || Sbjct 13003 AACTTTAACATTATAGAAATCAGTGAATTCGGAAAGGTCTGAAGTGTAGCATCACACATG 13062 Query 22198 GTTTTGATCGA 22208 |||||||| Sbjct 13063 CACTTGATCGA 13073 >seq813 Length=55966 Score = 161 bits (178), Expect = 3e-35 Identities = 244/346 (71%), Gaps = 1/346 (0%) Strand=Plus/Plus Query 26637 GCCACCAAGCATTTGCATGGTTCCACCAACGCCAACGATGACTTCGGTAGTGAACCGATC 26696 ||| || ||||| |||||||| || |||||| || | |||||||| ||| || || Sbjct 13439 GCCGCCCAGCATCTGCATGGTACCGCCAACGTTTACCACAACTTCGGTGGTGTACTTCTC 13498 Query 26697 CTGTCTGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGA 26756 | | ||||| |||||| | || |||| || |||||| | ||| |||| ||| Sbjct 13499 AGCGCCGGACTGATCGGTCCATTTACGGGTGCGCAGTTGGCCTTCGATATAGACCTGAGA 13558 Query 26757 ACCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACACGGTG 26816 |||||| ||||||||||| | ||||| |||||||||||| || || ||||| ||||| Sbjct 13559 ACCTTTACGCAGATACTCACCGGCAACTTCTGCCAGTTTGCCAAACAGCACCACGCGGTG 13618 Query 26817 CCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGC 26876 ||| || |||||||| || ||| || || ||||||||||| ||| || ||||| Sbjct 13619 CCATTCAGTCTGCTCTTTCATCTCACCGGTCGCTTTATCACGCCAGGATTCGGAAGTAGC 13678 Query 26877 AACTGTAAGGTTTGCAAATGCCGTTCCTGATGGGTGAATATCTGATTTCTGGATCATGCC 26936 | |||| ||| |||| || || | | || || | | ||| || || || | Sbjct 13679 CAGCGTAATGTTGGCAACTG-CGCCACCACTCGGCATGTAGCGTACTTCCGGGTCCTGGC 13737 Query 26937 CAAGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCAT 26982 | || ||| | | |||||||| |||||||||||||| ||||| Sbjct 13738 CCAGATTACCGACGAGAATCACCTTGTTTACGCCTCTGCTGGCCAT 13783 >seq1102 Length=22075 Score = 95.1 bits (104), Expect = 3e-15 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 22437 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAATCAAATAC 22496 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 2274 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATCTAAATCAATAAG 2215 Query 22497 TTACGTA 22503 ||| ||| Sbjct 2214 TTATGTA 2208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129293245510340