Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plutella_20xylostella_20[refseq_20GCF_5F000330985.1_202014-10-02] 1,794 sequences; 393,470,562 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq197 167 6e-36 seq1030 165 2e-35 >seq197 Length=620651 Score = 167 bits (184), Expect = 6e-36 Identities = 165/211 (78%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| |||||||| |||||||| || |||||||| || || ||| |||||| Sbjct 447873 CAGATTTTCGTCAAAACTCTGACAGGAAAGACCATCACCCTGGAAGTTGAAGCTTCAGAC 447814 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| || ||||| || || |||||||| ||||| || Sbjct 447813 ACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAACAG 447754 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || |||||||| || |||||||| || ||||| | || |||| |||| || ||| | Sbjct 447753 CGTCTCATCTTCGCTGGTAAACAGCTGGAGGATGGTCGCAC-CTTGTCCGACTACAACAT 447695 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || || || || |||||||||||| Sbjct 447694 TCAGAAGGAGTCTACCCTCCATCTTGTTTTG 447664 Score = 163 bits (180), Expect = 7e-35 Identities = 160/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || ||||| || || |||||| |||||| Sbjct 449086 CAGATTTTCGTGAAAACCCTAACTGGCAAGACAATCACTCTGGAAGTGGAAGCTTCAGAC 449027 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| || ||||| ||||| |||||||| |||||||| Sbjct 449026 ACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCCGACCAGCAG 448967 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||||||| ||||| || ||||| || | || | | || ||||| || Sbjct 448966 CGACTTATCTTCGCCGGTAAACAACTAGAAGACGGCCGTACATTGTCTGACTATAATATC 448907 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| ||||| || || |||| Sbjct 448906 CAGAAAGAGTCAACCCTTCA-CTTG 448883 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || |||||||| || || ||| |||||| Sbjct 446701 CAGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTAGAAGTCGAAGCTTCAGAC 446642 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| || ||||| ||||| || |||||||||||||| Sbjct 446641 ACCATCGAGAATGTAAAGGCTAAGATCCAAGACAAGGAAGGCATTCCTCCGGACCAGCAG 446582 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| ||||| || | || | | || || ||| || Sbjct 446581 CGTCTGATCTTCGCTGGTAAGCAGCTAGAAGACGGCCGCACCTTATCTGACTACAACATC 446522 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || ||||||||||| ||||| || Sbjct 446521 CAGAAGGAGTCTACCCTTCATCTTGTTTTACGACTCCGA 446483 Score = 161 bits (178), Expect = 2e-34 Identities = 164/211 (78%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || ||||| || || || ||| |||||| Sbjct 447385 CAGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACTCTGGAAGTTGAAGCTTCAGAC 447326 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| |||||| ||||| || |||||||| ||||| || || |||||||| Sbjct 447325 ACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGACCAGCAG 447266 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 | | ||||| || || || ||||| ||||| || | || |||| |||| || ||| | Sbjct 447265 AGGTTGATCTTTGCAGGCAAGCAGCTTGAAGACGGCCGCAC-CTTGTCCGACTACAACAT 447207 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||| |||||||| || || |||||||||||| Sbjct 447206 CCAGAAAGAATCTACCCTCCATCTTGTTTTG 447176 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || |||||||| || || ||| |||||| Sbjct 448329 CAGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAAGCTTCAGAC 448270 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| || ||||| ||||| || |||||||||||||| Sbjct 448269 ACCATCGAGAATGTAAAGGCTAAGATCCAAGACAAGGAAGGCATTCCTCCGGACCAGCAG 448210 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| ||||| || | || | | || || ||| || Sbjct 448209 CGTCTGATCTTCGCTGGTAAGCAGCTAGAAGACGGCCGCACCTTATCTGACTACAACATC 448150 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || ||||||||||| ||||| || Sbjct 448149 CAGAAGGAGTCTACCCTTCATCTTGTTTTACGACTCCGA 448111 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || ||||| || || || ||| |||||| Sbjct 446929 CAGATTTTCGTGAAAACCCTAACTGGCAAGACAATCACTCTGGAAGTTGAAGCTTCAGAC 446870 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| || ||||| ||||| |||||||| |||||||| Sbjct 446869 ACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCCGACCAGCAG 446810 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||||||| ||||| || ||||| || | || | | || ||||| || Sbjct 446809 CGACTTATCTTCGCCGGTAAACAACTAGAAGACGGCCGTACATTGTCAGACTATAATATC 446750 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 446749 CAGAAAGAGTCGACTCTTCA-CTTG 446726 Score = 149 bits (164), Expect = 2e-30 Identities = 159/206 (77%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| ||||| || ||||| || ||||| || || || ||| || ||| Sbjct 446473 CAGATTTTCGTGAAGACTCTGACGGGAAAGACCATCACTCTGGAAGTTGAAGCTTCGGAC 446414 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| |||||||| || || || || || |||||||| Sbjct 446413 ACCATCGAGAATGTAAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAG 446354 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || ||||||||||| |||||||| || ||||| | || |||| |||| || ||| | Sbjct 446353 CGTCTCATCTTCGCCGGTAAACAGCTGGAGGATGGTCGCAC-CTTGTCCGACTACAACAT 446295 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 |||||| || || || || || |||| Sbjct 446294 CCAAAAGGAGTCCACCCTTCA-CTTG 446270 Score = 145 bits (160), Expect = 2e-29 Identities = 158/206 (77%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || ||||| ||||| | ||||| || ||||| Sbjct 449789 CAGATATTCGTGAAGACCCTGACTGGGAAAACCATCACTTTGGAGGTCGAGCCTGCAGAC 449730 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| ||||||||||| || ||||| || |||||||| Sbjct 449729 ACCATCGAGAACGTTAAGGCGAAGATCCAGGACAAAGAGGGCATCCCGCCCGACCAGCAG 449670 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || |||||||| || || ||||| ||||| || | || |||| |||| || ||| | Sbjct 449669 CGTCTCATCTTCGCTGGCAAGCAGCTTGAAGACGGCCGCAC-CTTGTCCGACTACAACAT 449611 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 ||| ||||| || || ||||| |||| Sbjct 449610 CCAGAAAGAGTCCACCCTGCA-CTTG 449586 Score = 140 bits (154), Expect = 8e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || ||||| || ||||| || || || ||| |||||| Sbjct 448586 CAGATCTTTGTCAAGACTCTGACGGGAAAGACCATCACTCTGGAAGTTGAAGCTTCAGAC 448527 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||| ||||| |||||| ||||| || |||||||| ||||| || || |||||||| Sbjct 448526 ATCATTGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGACCAGCAG 448467 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 | | ||||||||||| || ||||| || ||||| | || |||| |||| || ||| | Sbjct 448466 AGGTTGATCTTCGCCGGCAACCAGCTAGAGGATGGTCGCAC-CTTGTCCGACTACAACAT 448408 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || || || || |||||||||||| Sbjct 448407 TCAGAAGGAGTCTACCCTCCATCTTGTTTTG 448377 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| ||||| || ||||| || ||||| || || || ||| || ||| Sbjct 448101 CAGATTTTCGTGAAGACTCTGACGGGAAAGACCATCACTCTGGAAGTTGAAGCTTCGGAC 448042 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| |||||||| || || ||||| || |||||||| Sbjct 448041 ACCATCGAGAATGTAAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAGCAG 447982 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || || || |||||||| | || || |||| || ||| | Sbjct 447981 CGTCTGATCTTCGCTGGTAAGCAACTAGAAGATGGCCGCACCCTATCCGACTACAACATT 447922 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 447921 CAGAAGGAGTCCACTCTTCA-CTTG 447898 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || || ||||| || |||||| ||||||| Sbjct 449561 CAGATTTTCGTGAAAACCCTGACTGGCAAGACAATTACCCTGGAAGTGGAAGCCTCAGAC 449502 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||||| || |||||||| ||||| || || |||||||| Sbjct 449501 ACAATTGAGAATGTGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGACCAGCAG 449442 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || || |||||| | || ||||| | || || | || || ||| || Sbjct 449441 AGGTTGATCTTTGCAGGCAAACAGTTGGAGGATGGCCGCACCCTGTCTGACTACAACATC 449382 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || ||||| |||| Sbjct 449381 CAGAAAGAGTCCACCCTGCA-CTTG 449358 Score = 120 bits (132), Expect = 7e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||||||||| || ||||| || ||||| || || || ||| |||||| Sbjct 448858 CAGATTTTCGTGAAAACTCTGACGGGAAAGACCATCACTCTGGAAGTTGAAGCTTCAGAC 448799 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| |||||| ||||| || ||||| || || |||||||| ||||| || Sbjct 448798 ACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAACAG 448739 Query 178044 CGACTTATCTTCGC 178057 || || |||||||| Sbjct 448738 CGTCTCATCTTCGC 448725 Score = 111 bits (122), Expect = 4e-19 Identities = 163/237 (69%), Gaps = 33/237 (14%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || |||||||| || || ||| |||||| Sbjct 447645 CAGATTTTCGTGAAAACCCTGACTGGTAAGACCATCACCCTGGAAGTCGAAGCTTCAGAC 447586 Query 177984 ACCATCGAGAACGTCAA--------------ACAA------------------AAGATTC 178011 ||||||||||| || || |||| ||||| | Sbjct 447585 ACCATCGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCGCCAAGATCC 447526 Query 178012 AGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCG 178071 | ||||| || || |||||||| |||||||| ||||||||||||||||| ||||| || | Sbjct 447525 AAGACAAGGAGGGCATCCCTCCCGACCAGCAGCGACTTATCTTCGCCGGTAAACAACTAG 447466 Query 178072 AAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || | || | | || ||||| |||| ||||| ||||| || || |||| Sbjct 447465 AAGACGGCCGTACATTGTCTGACTATAATATCCAGAAAGAGTCAACCCTTCA-CTTG 447410 Score = 107 bits (118), Expect = 5e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || || ||||| || |||||| ||||||| Sbjct 449333 CAGATTTTCGTGAAAACCCTGACTGGCAAGACAATTACCCTGGAAGTGGAAGCCTCAGAC 449274 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||||| || |||||||| ||||| || || |||||||| Sbjct 449273 ACAATTGAGAATGTGAAGGCCAAGATCCAAGACAAAGAGGGAATTCCCCCAGACCAGCAG 449214 Query 178044 CGACTTATCTTCGCCGGAAAACAG 178067 | | ||||| || || |||||| Sbjct 449213 AGGTTGATCTTTGCAGGCAAACAG 449190 >seq1030 Length=27445 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 2897 CAGATCTTCGTGAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTGGAGGCTTCCGAC 2838 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| ||||| |||||||| || || ||||| ||||||||||| Sbjct 2837 ACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 2778 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| |||||||| || |||||||| || ||||| | || || |||| || ||| || Sbjct 2777 CGACTGATCTTCGCTGGTAAACAGCTGGAGGATGGCCGTACCCTGTCCGACTACAACATC 2718 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || ||||| || || || | || ||||| || ||| Sbjct 2717 CAGAAGGAATCTACCCTTCACTTGGTGTTGAGGCTTAGA 2679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203703531486036